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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G71450
Z-value: 1.32
Transcription factors associated with AT1G71450
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G71450
|
AT1G71450 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G71450 | arTal_v1_Chr1_+_26927012_26927012 | -0.09 | 7.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 3.42 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 3.21 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 2.55 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.16 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 2.13 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.87 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr3_+_20612693_20612693 Show fit | 1.84 |
AT3G55580.1
|
Regulator of chromosome condensation (RCC1) family protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.81 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.69 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr3_-_23334034_23334034 Show fit | 1.63 |
AT3G63160.1
|
outer envelope membrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G71450
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.7 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 7.4 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 5.3 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.5 | 4.2 | GO:0009819 | drought recovery(GO:0009819) |
| 0.2 | 4.2 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.3 | 3.9 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 3.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 3.4 | GO:1901259 | chloroplast rRNA processing(GO:1901259) |
| 0.2 | 3.4 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
| 0.3 | 3.3 | GO:0010044 | response to aluminum ion(GO:0010044) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 64.8 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 12.2 | GO:0009526 | plastid envelope(GO:0009526) |
| 0.0 | 11.4 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 8.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.9 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 3.8 | GO:0031461 | cullin-RING ubiquitin ligase complex(GO:0031461) |
| 0.0 | 3.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 3.5 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 3.5 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 16.5 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 11.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.2 | 6.6 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 4.9 | GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity(GO:0015405) |
| 0.5 | 4.8 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 4.2 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 4.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 4.1 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 4.0 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.0 | 4.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.9 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
| 0.3 | 0.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.8 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.2 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.4 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 1.3 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.2 | 1.0 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 1.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.3 | 0.9 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.3 | 0.9 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.8 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 0.7 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |