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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G70920

Z-value: 1.32

Transcription factors associated with AT1G70920

Gene Symbol Gene ID Gene Info
AT1G70920 homeobox-leucine zipper protein 18

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
HB18arTal_v1_Chr1_+_26735894_267358940.068.5e-01Click!

Activity profile of AT1G70920 motif

Sorted Z-values of AT1G70920 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_15451988 3.06 AT4G31940.1
cytochrome P450, family 82, subfamily C, polypeptide 4
Chr5_+_23337832 2.22 AT5G57625.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr3_-_82182 2.01 AT3G01260.1
Galactose mutarotase-like superfamily protein
Chr2_+_11012499 1.82 AT2G25810.1
tonoplast intrinsic protein 4;1
Chr4_+_700566 1.80 AT4G01630.1
expansin A17
Chr3_+_5025383 1.74 AT3G14940.2
phosphoenolpyruvate carboxylase 3
Chr4_+_14762819 1.74 AT4G30170.1
Peroxidase family protein
Chr3_+_5025184 1.73 AT3G14940.1
phosphoenolpyruvate carboxylase 3
Chr5_-_24377206 1.65 AT5G60660.1
plasma membrane intrinsic protein 2;4
Chr4_+_11754912 1.62 AT4G22214.1
Defensin-like (DEFL) family protein
Chr5_+_21688763 1.62 AT5G53450.2
AT5G53450.3
AT5G53450.1
OBP3-responsive protein 1
Chr3_-_68665 1.60 AT3G01190.1
Peroxidase superfamily protein
Chr3_+_5585872 1.58 AT3G16440.2
AT3G16440.1
myrosinase-binding protein-like protein-300B
Chr1_+_3093644 1.35 AT1G09560.1
germin-like protein 5
Chr5_+_16301072 1.33 AT5G40730.1
arabinogalactan protein 24
Chr2_-_19207608 1.30 AT2G46740.1
D-arabinono-1,4-lactone oxidase family protein
Chr1_-_20156520 1.24 AT1G54000.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_16596640 1.20 AT4G34800.1
SAUR-like auxin-responsive protein family
Chr1_-_10664570 1.19 AT1G30280.2
AT1G30280.3
AT1G30280.1
Chaperone DnaJ-domain superfamily protein
Chr5_-_14209922 1.19 AT5G36130.1
Cytochrome P450 superfamily protein
Chr3_-_6236091 1.18 AT3G18200.1
AT3G18200.2
nodulin MtN21 /EamA-like transporter family protein
Chr3_+_2378219 1.15 AT3G07425.1
transmembrane protein
Chr1_+_9654475 1.15 AT1G27740.1
root hair defective 6-like 4
Chr5_-_22255663 1.14 AT5G54790.1
AT5G54790.2
CTD small phosphatase-like protein
Chr3_-_19078955 1.13 AT3G51400.1
hypothetical protein (DUF241)
Chr4_-_14257965 1.13 AT4G28890.1
RING/U-box superfamily protein
Chr5_-_4483247 1.11 AT5G13910.1
Integrase-type DNA-binding superfamily protein
Chr5_+_9234600 1.09 AT5G26310.1
UDP-Glycosyltransferase superfamily protein
Chr2_+_6893949 1.08 AT2G15830.1
hypothetical protein
Chr3_-_4880483 1.08 AT3G14530.1
Terpenoid synthases superfamily protein
Chr3_-_4042075 1.08 AT3G12710.1
DNA glycosylase superfamily protein
Chr5_-_8406132 1.04 AT5G24570.1
AT5G24575.1
hypothetical protein
hypothetical protein
Chr1_+_21136835 1.03 AT1G56430.1
nicotianamine synthase 4
Chr5_+_20644525 1.01 AT5G50760.1
SAUR-like auxin-responsive protein family
Chr1_+_3086101 0.99 AT1G09540.1
myb domain protein 61
Chr4_+_11983974 0.99 AT4G22810.1
Putative AT-hook DNA-binding family protein
Chr2_-_16846194 0.98 AT2G40330.1
PYR1-like 6
Chr5_+_8584535 0.98 AT5G24920.1
glutamine dumper 5
Chr5_+_880148 0.97 AT5G03510.1
C2H2-type zinc finger family protein
Chr1_-_29203418 0.93 AT1G77690.1
like AUX1 3
Chr4_-_14776247 0.92 AT4G30190.1
H[+]-ATPase 2
Chr4_-_15262412 0.91 AT4G31470.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr4_-_14776058 0.91 AT4G30190.2
H[+]-ATPase 2
Chr2_-_10704825 0.90 AT2G25150.1
HXXXD-type acyl-transferase family protein
Chr2_-_292624 0.88 AT2G01660.2
AT2G01660.3
AT2G01660.1
plasmodesmata-located protein 6
Chr4_+_18466519 0.87 AT4G39795.1
hypothetical protein (DUF581)
Chr5_+_22261134 0.87 AT5G54800.1
glucose 6-phosphate/phosphate translocator 1
Chr3_+_20679664 0.87 AT3G55720.1
replication factor C subunit, putative (DUF620)
Chr3_-_4799612 0.87 AT3G14370.1
Protein kinase superfamily protein
Chr5_-_7084859 0.86 AT5G20885.1
RING/U-box superfamily protein
Chr5_-_21619281 0.86 AT5G53290.1
cytokinin response factor 3
Chr1_+_1425539 0.86 AT1G05000.3
AT1G05000.1
AT1G05000.2
Phosphotyrosine protein phosphatases superfamily protein
Chr5_+_25550937 0.86 AT5G63850.1
amino acid permease 4
Chr1_+_7366775 0.85 AT1G21050.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr1_-_19649340 0.84 AT1G52750.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_266557 0.84 AT3G01730.1
transmembrane protein
Chr1_+_7366590 0.84 AT1G21050.2
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr5_-_7385833 0.84 AT5G22310.1
trichohyalin-like protein
Chr1_-_3931701 0.83 AT1G11670.1
MATE efflux family protein
Chr2_-_15614916 0.83 AT2G37170.1
AT2G37170.2
plasma membrane intrinsic protein 2
Chr1_-_8189220 0.83 AT1G23090.4
AT1G23090.1
AT1G23090.3
AT1G23090.2
sulfate transporter 91
Chr5_+_17451488 0.82 AT5G43420.1
RING/U-box superfamily protein
Chr4_-_11032677 0.82 AT4G20460.1
AT4G20470.1
NAD(P)-binding Rossmann-fold superfamily protein
transmembrane protein
Chr5_+_3889906 0.81 AT5G12050.1
rho GTPase-activating protein
Chr5_-_26129547 0.81 AT5G65390.1
arabinogalactan protein 7
Chr3_-_7656053 0.81 AT3G21720.1
isocitrate lyase
Chr1_-_22871298 0.80 AT1G61890.3
AT1G61890.1
AT1G61890.2
MATE efflux family protein
Chr1_-_23892193 0.79 AT1G64380.1
Integrase-type DNA-binding superfamily protein
Chr2_+_1676999 0.78 AT2G04780.2
FASCICLIN-like arabinoogalactan 7
Chr1_+_1279351 0.77 AT1G04610.1
YUCCA 3
Chr4_+_8679754 0.77 AT4G15230.2
AT4G15230.3
AT4G15230.1
AT4G15230.4
pleiotropic drug resistance 2
Chr2_+_1676717 0.77 AT2G04780.1
FASCICLIN-like arabinoogalactan 7
Chr4_+_12660687 0.77 AT4G24510.1
HXXXD-type acyl-transferase family protein
Chr5_+_9873067 0.76 AT5G27850.1
AT5G27850.2
Ribosomal protein L18e/L15 superfamily protein
Chr3_+_1727151 0.76 AT3G05800.1
AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
Chr3_-_1268350 0.75 AT3G04670.2
AT3G04670.1
WRKY DNA-binding protein 39
Chr5_-_21357219 0.75 AT5G52650.1
RNA binding Plectin/S10 domain-containing protein
Chr3_-_9805781 0.74 AT3G26690.2
AT3G26690.1
nudix hydrolase homolog 13
Chr1_+_6643942 0.74 AT1G19230.2
Riboflavin synthase-like superfamily protein
Chr1_+_5136874 0.74 AT1G14890.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_-_10278794 0.73 AT4G18670.1
Leucine-rich repeat (LRR) family protein
Chr5_-_19504534 0.73 AT5G48110.1
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr1_-_16800307 0.73 AT1G44170.2
AT1G44170.1
aldehyde dehydrogenase 3H1
Chr3_+_6227341 0.73 AT3G18170.2
Glycosyltransferase family 61 protein
Chr2_+_18672497 0.72 AT2G45290.1
AT2G45290.2
Transketolase
Chr3_-_10129937 0.72 AT3G27360.1
Histone superfamily protein
Chr5_+_22492892 0.72 AT5G55530.2
AT5G55530.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_-_1139631 0.71 AT5G04150.2
AT5G04150.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_+_19683809 0.71 AT5G48560.1
AT5G48560.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_-_28396677 0.71 AT1G75620.1
glyoxal oxidase-related protein
Chr1_+_6644189 0.71 AT1G19230.1
Riboflavin synthase-like superfamily protein
Chr4_+_14244290 0.70 AT4G28850.1
xyloglucan endotransglucosylase/hydrolase 26
Chr3_+_23232272 0.70 AT3G62830.1
AT3G62830.2
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_8145252 0.70 AT5G24090.1
chitinase A
Chr4_-_15194665 0.69 AT4G31320.1
SAUR-like auxin-responsive protein family
Chr3_-_16849944 0.69 AT3G45840.1
Cysteine/Histidine-rich C1 domain family protein
Chr4_+_749307 0.68 AT4G01730.1
DHHC-type zinc finger family protein
Chr1_+_9355827 0.68 AT1G26960.1
homeobox protein 23
Chr5_+_22493103 0.66 AT5G55530.3
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr1_+_23192146 0.66 AT1G62640.2
AT1G62640.1
3-ketoacyl-acyl carrier protein synthase III
Chr3_+_6228342 0.65 AT3G18170.1
Glycosyltransferase family 61 protein
Chr1_-_16798675 0.64 AT1G44170.3
aldehyde dehydrogenase 3H1
Chr1_-_8842334 0.63 AT1G25230.1
AT1G25230.2
AT1G25230.3
Calcineurin-like metallo-phosphoesterase superfamily protein
Chr1_+_26651840 0.63 AT1G70690.1
Receptor-like protein kinase-related family protein
Chr4_+_12934562 0.62 AT4G25250.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr4_+_17768042 0.62 AT4G37790.1
Homeobox-leucine zipper protein family
Chr2_+_15379660 0.61 AT2G36690.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_+_15379846 0.61 AT2G36690.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_16876549 0.61 AT1G44608.1
hypothetical protein
Chr5_+_4623198 0.60 AT5G14340.1
AT5G14340.2
myb domain protein 40
Chr5_+_2120472 0.60 AT5G06839.3
AT5G06839.2
AT5G06839.1
bZIP transcription factor family protein
Chr5_+_22474142 0.60 AT5G55480.1
SHV3-like 1
Chr1_+_1136078 0.60 AT1G04250.1
AUX/IAA transcriptional regulator family protein
Chr2_-_14260904 0.60 AT2G33710.1
Integrase-type DNA-binding superfamily protein
Chr5_+_1399395 0.60 AT5G04820.1
ovate family protein 13
Chr2_-_14260739 0.60 AT2G33710.2
Integrase-type DNA-binding superfamily protein
Chr1_+_19488755 0.59 AT1G52330.1
AT1G52330.2
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr3_-_2343697 0.59 AT3G07340.2
AT3G07340.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_9996713 0.59 AT1G28440.1
HAESA-like 1
Chr3_-_6980523 0.58 AT3G20015.1
Eukaryotic aspartyl protease family protein
Chr2_-_16301245 0.58 AT2G39040.1
Peroxidase superfamily protein
Chr4_+_12376122 0.58 AT4G23750.1
AT4G23750.2
cytokinin response factor 2
Chr1_+_10996870 0.58 AT1G30900.1
VACUOLAR SORTING RECEPTOR 6
Chr3_-_20229214 0.58 AT3G54650.1
RNI-like superfamily protein
Chr4_-_6435396 0.57 AT4G10380.1
NOD26-like intrinsic protein 5;1
Chr1_+_10236337 0.57 AT1G29280.1
WRKY DNA-binding protein 65
Chr4_-_15857440 0.57 AT4G32860.1
Avr9/Cf-9 rapidly elicited protein
Chr1_-_10949482 0.57 AT1G30820.1
CTP synthase family protein
Chr5_+_8967655 0.57 AT5G25760.1
AT5G25760.2
peroxin4
Chr4_-_18098633 0.57 AT4G38770.1
proline-rich protein 4
Chr2_-_7899242 0.57 AT2G18160.1
basic leucine-zipper 2
Chr2_-_10429487 0.56 AT2G24550.1
major centromere autoantigen B-like protein
Chr5_-_9333284 0.55 AT5G26660.2
AT5G26660.1
myb domain protein 86
Chr2_-_16368570 0.55 AT2G39210.1
Major facilitator superfamily protein
Chr2_+_8026957 0.55 AT2G18500.1
ovate family protein 7
Chr5_+_22694823 0.54 AT5G56040.2
AT5G56040.1
Leucine-rich receptor-like protein kinase family protein
Chr3_+_4462841 0.54 AT3G13650.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr4_-_18551183 0.53 AT4G40010.1
SNF1-related protein kinase 2.7
Chr5_+_84474 0.52 AT5G01210.1
HXXXD-type acyl-transferase family protein
Chr3_+_9776958 0.51 AT3G26610.1
Pectin lyase-like superfamily protein
Chr5_+_24629256 0.50 AT5G61240.2
AT5G61240.1
Leucine-rich repeat (LRR) family protein
Chr1_-_8266048 0.50 AT1G23300.1
MATE efflux family protein
Chr1_-_22726190 0.50 AT1G61590.1
Protein kinase superfamily protein
Chr2_-_10321857 0.50 AT2G24260.2
LJRHL1-like 1
Chr1_+_7734661 0.50 AT1G21980.1
phosphatidylinositol-4-phosphate 5-kinase 1
Chr3_-_17248791 0.50 AT3G46830.2
AT3G46830.1
RAB GTPase homolog A2C
Chr3_-_21024131 0.50 AT3G56760.1
Protein kinase superfamily protein
Chr1_-_25841686 0.50 AT1G68795.1
CLAVATA3/ESR-RELATED 12
Chr4_-_17300367 0.49 AT4G36700.1
RmlC-like cupins superfamily protein
Chr2_+_18958999 0.49 AT2G46140.1
Late embryogenesis abundant protein
Chr1_+_25657757 0.49 AT1G68440.1
transmembrane protein
Chr3_-_7223939 0.49 AT3G20650.3
AT3G20650.2
AT3G20650.1
mRNA capping enzyme family protein
Chr5_+_15409684 0.48 AT5G38480.1
AT5G38480.2
AT5G38480.3
general regulatory factor 3
Chr5_+_3476820 0.48 AT5G10990.1
SAUR-like auxin-responsive protein family
Chr1_-_16767685 0.48 AT1G44100.1
amino acid permease 5
Chr3_+_11671637 0.47 AT3G29780.1
ralf-like 27
Chr5_-_9242854 0.47 AT5G26330.1
Cupredoxin superfamily protein
Chr1_-_11719988 0.47 AT1G32450.1
nitrate transporter 1.5
Chr3_+_11033665 0.47 AT3G29035.1
NAC domain containing protein 3
Chr5_-_16908007 0.47 AT5G42280.1
AT5G42280.2
Cysteine/Histidine-rich C1 domain family protein
Chr3_+_7940914 0.47 AT3G22415.1
hypothetical protein
Chr2_+_17490271 0.46 AT2G41900.1
CCCH-type zinc finger protein with ARM repeat domain-containing protein
Chr4_+_18185437 0.46 AT4G39030.1
MATE efflux family protein
Chr1_-_30400045 0.46 AT1G80900.2
magnesium transporter 1
Chr2_-_8409012 0.46 AT2G19410.2
AT2G19410.3
AT2G19410.1
U-box domain-containing protein kinase family protein
Chr1_+_19771916 0.46 AT1G53050.1
AT1G53050.2
Protein kinase superfamily protein
Chr1_+_29446861 0.45 AT1G78260.1
AT1G78260.2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_22536072 0.45 AT5G55650.1
transmembrane protein
Chr2_+_8253333 0.44 AT2G19050.2
AT2G19050.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_13864596 0.43 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
glycine-rich protein 23
Chr2_+_16927501 0.43 AT2G40530.1
transmembrane protein
Chr2_-_10322423 0.43 AT2G24260.1
LJRHL1-like 1
Chr5_-_25652247 0.43 AT5G64100.1
Peroxidase superfamily protein
Chr5_-_24066170 0.42 AT5G59730.1
AT5G59730.2
exocyst subunit exo70 family protein H7
Chr3_+_16466144 0.42 AT3G45010.1
serine carboxypeptidase-like 48
Chr1_-_5346342 0.42 AT1G15550.1
gibberellin 3-oxidase 1
Chr1_-_6873358 0.42 AT1G19840.1
SAUR-like auxin-responsive protein family
Chr1_-_1692179 0.41 AT1G05650.1
Pectin lyase-like superfamily protein
Chr3_-_14196865 0.41 AT3G41762.1
hypothetical protein
Chr1_-_27263719 0.41 AT1G72420.3
AT1G72420.6
AT1G72420.4
AT1G72420.5
AT1G72420.2
AT1G72420.1
NADH:ubiquinone oxidoreductase intermediate-associated protein 30
Chr1_-_29152364 0.41 AT1G77590.2
AT1G77590.1
long chain acyl-CoA synthetase 9
Chr1_+_18290942 0.41 AT1G49430.1
AT1G49430.2
long-chain acyl-CoA synthetase 2
Chr3_-_4884012 0.41 AT3G14540.1
AT3G14540.2
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr1_+_11575320 0.40 AT1G32170.1
xyloglucan endotransglucosylase/hydrolase 30
Chr1_-_21430910 0.40 AT1G57860.1
Translation protein SH3-like family protein
Chr5_-_17825762 0.40 AT5G44250.1
AT5G44250.2
peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53)
Chr1_-_30400399 0.40 AT1G80900.1
magnesium transporter 1
Chr1_+_20951856 0.39 AT1G56020.1
serine/arginine repetitive matrix-like protein
Chr5_+_3931349 0.39 AT5G12170.2
AT5G12170.3
CRT (chloroquine-resistance transporter)-like transporter 3
Chr1_+_5875295 0.39 AT1G17190.1
glutathione S-transferase tau 26
Chr5_+_306939 0.39 AT5G01800.1
saposin B domain-containing protein
Chr4_-_2682319 0.39 AT4G05200.1
AT4G05200.2
cysteine-rich RLK (RECEPTOR-like protein kinase) 25
Chr1_+_7605620 0.39 AT1G21660.1
Chaperone DnaJ-domain superfamily protein
Chr4_-_16207956 0.39 AT4G33790.2
AT4G33790.1
Jojoba acyl CoA reductase-related male sterility protein
Chr4_+_8397693 0.39 AT4G14640.2
AT4G14640.3
AT4G14640.1
calmodulin 8
Chr5_+_20176080 0.39 AT5G49680.2
SABRE-like protein
Chr3_+_5061681 0.38 AT3G15030.2
AT3G15030.3
AT3G15030.4
AT3G15030.1
TCP family transcription factor 4
Chr4_-_15312987 0.38 AT4G31590.1
Cellulose-synthase-like C5
Chr4_+_12923846 0.38 AT4G25230.1
AT4G25230.3
RPM1 interacting protein 2
Chr4_-_8369312 0.38 AT4G14580.1
CBL-interacting protein kinase 4

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G70920

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0071281 cellular response to iron ion(GO:0071281)
0.5 2.0 GO:0019388 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.3 0.9 GO:0035436 triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436)
0.3 1.0 GO:0030417 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.2 0.8 GO:0006097 glyoxylate cycle(GO:0006097)
0.2 0.6 GO:0055047 generative cell mitosis(GO:0055047)
0.2 0.8 GO:0080168 abscisic acid transport(GO:0080168)
0.2 0.9 GO:0060919 auxin influx(GO:0060919)
0.2 0.5 GO:0015802 basic amino acid transport(GO:0015802)
0.1 1.0 GO:0032890 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.1 1.9 GO:0010274 hydrotropism(GO:0010274)
0.1 0.4 GO:0010541 acropetal auxin transport(GO:0010541)
0.1 0.5 GO:0002164 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.1 0.5 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.1 0.3 GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.1 0.5 GO:0019567 pentose biosynthetic process(GO:0019322) arabinose biosynthetic process(GO:0019567)
0.1 0.4 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.1 0.5 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.1 0.9 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.1 0.5 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.8 GO:0045226 UDP-L-arabinose biosynthetic process(GO:0033358) extracellular polysaccharide biosynthetic process(GO:0045226) capsule polysaccharide biosynthetic process(GO:0045227) capsule organization(GO:0045230) extracellular polysaccharide metabolic process(GO:0046379)
0.1 1.3 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.4 GO:0006423 cysteinyl-tRNA aminoacylation(GO:0006423)
0.1 0.3 GO:0016098 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.1 0.6 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.1 0.3 GO:0032210 regulation of telomere maintenance via telomerase(GO:0032210) regulation of telomere maintenance via telomere lengthening(GO:1904356) negative regulation of DNA biosynthetic process(GO:2000279)
0.1 0.2 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.1 0.6 GO:0090057 root radial pattern formation(GO:0090057)
0.1 0.6 GO:1904276 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.1 0.7 GO:0034052 positive regulation of plant-type hypersensitive response(GO:0034052)
0.1 0.7 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.1 0.3 GO:0006741 NADP biosynthetic process(GO:0006741)
0.1 1.1 GO:0048766 root hair initiation(GO:0048766)
0.1 0.9 GO:0008216 spermidine metabolic process(GO:0008216)
0.1 0.7 GO:0009942 longitudinal axis specification(GO:0009942)
0.1 1.3 GO:0010030 positive regulation of seed germination(GO:0010030)
0.1 0.1 GO:0018874 benzoate metabolic process(GO:0018874)
0.1 0.7 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.1 0.4 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.1 0.2 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.1 3.5 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.1 0.1 GO:0080051 cutin transport(GO:0080051)
0.1 0.4 GO:0009650 UV protection(GO:0009650)
0.1 1.0 GO:0052541 plant-type cell wall cellulose metabolic process(GO:0052541)
0.1 1.0 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 0.2 GO:0048462 carpel formation(GO:0048462)
0.1 0.3 GO:0043478 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.1 1.1 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.1 0.7 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.1 1.3 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.1 0.7 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.1 2.7 GO:0010311 lateral root formation(GO:0010311)
0.0 0.3 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.0 0.6 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.0 0.4 GO:1902025 nitrate import(GO:1902025)
0.0 0.6 GO:0016558 protein import into peroxisome matrix(GO:0016558)
0.0 0.3 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.0 0.2 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.4 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.1 GO:0006212 thymine catabolic process(GO:0006210) uracil catabolic process(GO:0006212) beta-alanine biosynthetic process(GO:0019483) thymine metabolic process(GO:0019859)
0.0 2.7 GO:0048825 cotyledon development(GO:0048825)
0.0 0.4 GO:0009635 response to herbicide(GO:0009635)
0.0 0.4 GO:0005513 detection of calcium ion(GO:0005513)
0.0 1.1 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 1.2 GO:0006284 base-excision repair(GO:0006284)
0.0 0.3 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 1.1 GO:0010214 seed coat development(GO:0010214)
0.0 2.4 GO:0048767 root hair elongation(GO:0048767)
0.0 0.1 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.0 0.5 GO:1902074 response to salt(GO:1902074)
0.0 0.4 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.0 0.2 GO:0043666 regulation of phosphoprotein phosphatase activity(GO:0043666)
0.0 0.2 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 0.3 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.3 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 0.1 GO:0071490 far-red light signaling pathway(GO:0010018) cellular response to far red light(GO:0071490)
0.0 0.5 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.0 2.1 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 0.3 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.0 0.2 GO:0009446 putrescine metabolic process(GO:0009445) putrescine biosynthetic process(GO:0009446) putrescine biosynthetic process from arginine(GO:0033388)
0.0 0.7 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.5 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.2 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.3 GO:0009641 shade avoidance(GO:0009641)
0.0 0.5 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.0 0.4 GO:0010152 pollen maturation(GO:0010152)
0.0 0.3 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.1 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.3 GO:0046688 response to copper ion(GO:0046688)
0.0 0.8 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.9 GO:0009744 response to sucrose(GO:0009744)
0.0 0.6 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.2 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.3 GO:0050821 protein stabilization(GO:0050821)
0.0 1.2 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.7 GO:0006865 amino acid transport(GO:0006865)
0.0 0.4 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.3 GO:0006144 purine nucleobase metabolic process(GO:0006144)
0.0 0.4 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 0.1 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 1.1 GO:0006081 cellular aldehyde metabolic process(GO:0006081)
0.0 0.4 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.2 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.2 GO:0045927 positive regulation of growth(GO:0045927)
0.0 0.1 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 0.2 GO:0009638 phototropism(GO:0009638)
0.0 0.0 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0009514 glyoxysome(GO:0009514)
0.1 0.4 GO:0030689 Noc complex(GO:0030689)
0.1 0.6 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.3 GO:0000782 telomere cap complex(GO:0000782) nuclear telomere cap complex(GO:0000783)
0.1 0.5 GO:0005845 mRNA cap binding complex(GO:0005845)
0.1 0.4 GO:0009897 external side of plasma membrane(GO:0009897)
0.1 0.6 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.4 GO:0035619 root hair tip(GO:0035619)
0.0 0.9 GO:0072686 mitotic spindle(GO:0072686)
0.0 0.3 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.2 GO:0005776 autophagosome(GO:0005776)
0.0 0.2 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.0 0.3 GO:0016272 prefoldin complex(GO:0016272)
0.0 0.3 GO:0048226 Casparian strip(GO:0048226)
0.0 1.1 GO:0016592 mediator complex(GO:0016592)
0.0 0.4 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 0.0 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.0 0.7 GO:1902554 serine/threonine protein kinase complex(GO:1902554)
0.0 5.2 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.6 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.1 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 0.2 GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain(GO:0033178)
0.0 4.7 GO:0048046 apoplast(GO:0048046)
0.0 0.2 GO:0005753 mitochondrial proton-transporting ATP synthase complex(GO:0005753)
0.0 6.0 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 0.4 GO:0000145 exocyst(GO:0000145)
0.0 0.5 GO:0009504 cell plate(GO:0009504)
0.0 0.1 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 3.5 GO:0008964 phosphoenolpyruvate carboxylase activity(GO:0008964)
0.7 2.0 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.4 1.1 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.3 0.9 GO:0015152 hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152)
0.3 1.4 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.3 1.0 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 1.3 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.2 0.7 GO:0008460 dTDP-glucose 4,6-dehydratase activity(GO:0008460)
0.1 0.7 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.4 GO:0001216 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 0.5 GO:0008174 mRNA methyltransferase activity(GO:0008174)
0.1 0.3 GO:0010521 telomerase inhibitor activity(GO:0010521)
0.1 1.2 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 1.3 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.1 0.4 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.3 GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor(GO:0016726)
0.1 0.4 GO:0009885 transmembrane receptor histidine kinase activity(GO:0009784) transmembrane histidine kinase cytokinin receptor activity(GO:0009885)
0.1 0.5 GO:0003785 actin monomer binding(GO:0003785)
0.1 2.1 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.1 0.9 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.1 0.4 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
0.1 0.3 GO:0016920 pyroglutamyl-peptidase activity(GO:0016920)
0.1 0.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.3 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.1 0.3 GO:0031683 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.1 0.8 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.1 0.9 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.1 0.2 GO:0070034 telomerase RNA binding(GO:0070034)
0.1 0.3 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.4 GO:0102391 acyl-CoA ligase activity(GO:0003996) decanoate--CoA ligase activity(GO:0102391)
0.1 2.1 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.4 GO:0008121 ubiquinol-cytochrome-c reductase activity(GO:0008121) oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor(GO:0016681)
0.1 0.2 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.3 GO:0050551 myrcene synthase activity(GO:0050551)
0.0 0.2 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.0 0.1 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.0 1.0 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.2 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.4 GO:0010011 auxin binding(GO:0010011)
0.0 0.7 GO:0004312 fatty acid synthase activity(GO:0004312)
0.0 0.6 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 1.8 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.8 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 4.3 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.8 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 2.3 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.0 2.6 GO:0042910 xenobiotic transporter activity(GO:0042910)
0.0 0.4 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.2 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.0 0.4 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.8 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 0.5 GO:0003951 NAD+ kinase activity(GO:0003951)
0.0 0.3 GO:0015140 malate transmembrane transporter activity(GO:0015140)
0.0 0.5 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.1 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.0 0.3 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 1.0 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.1 GO:0008665 tRNA 2'-phosphotransferase activity(GO:0000215) 2'-phosphotransferase activity(GO:0008665)
0.0 0.8 GO:0005179 hormone activity(GO:0005179)
0.0 0.8 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.4 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.0 0.1 GO:0043682 copper-transporting ATPase activity(GO:0043682)
0.0 0.1 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.0 0.6 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.3 GO:0008536 Ran GTPase binding(GO:0008536)
0.0 0.2 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.5 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.3 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.4 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.0 0.1 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.0 0.2 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.3 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.2 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 0.1 GO:0022841 leak channel activity(GO:0022840) potassium ion leak channel activity(GO:0022841) narrow pore channel activity(GO:0022842)
0.0 0.0 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.1 GO:0004478 methionine adenosyltransferase activity(GO:0004478)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.1 NABA SECRETED FACTORS Genes encoding secreted soluble factors
0.1 0.7 PID AJDISS 2PATHWAY Posttranslational regulation of adherens junction stability and dissassembly
0.1 0.2 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.1 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
0.0 0.2 REACTOME G1 PHASE Genes involved in G1 Phase
0.0 0.2 REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex