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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G70920
Z-value: 1.32
Transcription factors associated with AT1G70920
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G70920
|
AT1G70920 | homeobox-leucine zipper protein 18 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HB18 | arTal_v1_Chr1_+_26735894_26735894 | 0.06 | 8.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 3.06 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr5_+_23337832_23337832 Show fit | 2.22 |
AT5G57625.1
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 2.01 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr2_+_11012499_11012499 Show fit | 1.82 |
AT2G25810.1
|
tonoplast intrinsic protein 4;1 |
|
| arTal_v1_Chr4_+_700566_700566 Show fit | 1.80 |
AT4G01630.1
|
expansin A17 |
|
| arTal_v1_Chr3_+_5025383_5025383 Show fit | 1.74 |
AT3G14940.2
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr4_+_14762819_14762819 Show fit | 1.74 |
AT4G30170.1
|
Peroxidase family protein |
|
| arTal_v1_Chr3_+_5025184_5025184 Show fit | 1.73 |
AT3G14940.1
|
phosphoenolpyruvate carboxylase 3 |
|
| arTal_v1_Chr5_-_24377206_24377206 Show fit | 1.65 |
AT5G60660.1
|
plasma membrane intrinsic protein 2;4 |
|
| arTal_v1_Chr4_+_11754912_11754912 Show fit | 1.62 |
AT4G22214.1
|
Defensin-like (DEFL) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G70920
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.5 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 1.0 | 3.1 | GO:0071281 | cellular response to iron ion(GO:0071281) |
| 0.1 | 2.7 | GO:0010311 | lateral root formation(GO:0010311) |
| 0.0 | 2.7 | GO:0048825 | cotyledon development(GO:0048825) |
| 0.0 | 2.4 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 2.1 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.5 | 2.0 | GO:0019388 | galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
| 0.1 | 1.9 | GO:0010274 | hydrotropism(GO:0010274) |
| 0.1 | 1.3 | GO:0010497 | plasmodesmata-mediated intercellular transport(GO:0010497) |
| 0.1 | 1.3 | GO:0010030 | positive regulation of seed germination(GO:0010030) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.0 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 5.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 1.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.1 | GO:0016592 | mediator complex(GO:0016592) |
| 0.0 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.3 | 0.8 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 0.7 | GO:1902554 | serine/threonine protein kinase complex(GO:1902554) |
| 0.1 | 0.6 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.1 | 0.6 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.7 | 3.5 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.0 | 2.6 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 0.0 | 2.3 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.1 | 2.1 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
| 0.1 | 2.1 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.7 | 2.0 | GO:0004034 | aldose 1-epimerase activity(GO:0004034) |
| 0.0 | 1.8 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.3 | 1.4 | GO:0004028 | 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028) |
| 0.2 | 1.3 | GO:0050105 | L-gulonolactone oxidase activity(GO:0050105) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.7 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 0.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.2 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.0 | 0.2 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |