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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69780
Z-value: 0.67
Transcription factors associated with AT1G69780
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69780
|
AT1G69780 | Homeobox-leucine zipper protein family |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATHB13 | arTal_v1_Chr1_+_26258788_26258788 | -0.10 | 7.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 1.03 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 0.93 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 0.88 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr4_+_6832650_6832650 Show fit | 0.86 |
AT4G11210.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_-_16998925_16998925 Show fit | 0.86 |
AT5G42510.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 0.84 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 0.79 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_23337832_23337832 Show fit | 0.77 |
AT5G57625.1
|
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr5_-_23301689_23301689 Show fit | 0.77 |
AT5G57530.1
|
xyloglucan endotransglucosylase/hydrolase 12 |
|
| arTal_v1_Chr5_+_1461786_1461786 Show fit | 0.75 |
AT5G04960.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69780
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.5 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 2.4 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 2.4 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 2.3 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 2.2 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.0 | 2.2 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.1 | 2.1 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.0 | 2.0 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 1.9 | GO:0009804 | coumarin metabolic process(GO:0009804) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 20.3 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 8.0 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 7.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 2.3 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 1.6 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.0 | 1.6 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 1.1 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 3.4 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.4 | 3.3 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 3.0 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 2.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 2.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 2.7 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 2.5 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
| 0.0 | 2.3 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.0 | 2.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.2 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
| 0.0 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.9 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.4 | REACTOME CELL DEATH SIGNALLING VIA NRAGE NRIF AND NADE | Genes involved in Cell death signalling via NRAGE, NRIF and NADE |
| 0.1 | 0.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.3 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.3 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
| 0.0 | 0.2 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |