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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G69690

Z-value: 1.01

Transcription factors associated with AT1G69690

Gene Symbol Gene ID Gene Info
AT1G69690
AT1G69690 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP15arTal_v1_Chr1_+_26216009_262160090.582.9e-02Click!

Activity profile of AT1G69690 motif

Sorted Z-values of AT1G69690 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_5205869 3.00 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr5_+_5206156 2.98 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr1_+_209208 2.77 AT1G01580.1
FRO2
ferric reduction oxidase 2
Chr1_+_208995 2.76 AT1G01580.2
FRO2
ferric reduction oxidase 2
Chr5_-_22712441 2.51 AT5G56080.1
NAS2
nicotianamine synthase 2
Chr4_-_18472048 2.07 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr5_+_22388782 1.81 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr5_+_22388521 1.76 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr1_-_3167924 1.71 AT1G09780.1
iPGAM1
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
Chr3_+_3595694 1.71 AT3G11430.1
GPAT5
glycerol-3-phosphate acyltransferase 5
Chr2_+_19245591 1.62 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
Chr4_-_13019400 1.45 AT4G25480.1
DREB1A
dehydration response element B1A
Chr2_+_19246681 1.44 AT2G46830.3
CCA1
circadian clock associated 1
Chr1_-_7086873 1.43 AT1G20440.1
COR47
cold-regulated 47
Chr1_+_22198266 1.32 AT1G60190.1
PUB19
ARM repeat superfamily protein
Chr1_+_10991478 1.31 AT1G30870.1
AT1G30870
Peroxidase superfamily protein
Chr4_+_2572621 1.20 AT4G05020.2
NDB2
NAD(P)H dehydrogenase B2
Chr4_+_2572427 1.20 AT4G05020.1
NDB2
NAD(P)H dehydrogenase B2
Chr3_-_4042075 1.19 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr1_-_19250823 1.17 AT1G51840.1
AT1G51840.3
AT1G51840.4
AT1G51840.5
AT1G51840.2
AT1G51840
kinase-like protein
Chr1_-_28117405 1.15 AT1G74840.2
AT1G74840.1
AT1G74840
Homeodomain-like superfamily protein
Chr4_+_10861382 1.15 AT4G20070.1
AT4G20070.2
AAH
allantoate amidohydrolase
Chr1_-_18360426 1.11 AT1G49600.2
AT1G49600.1
AT1G49600.3
RBP47A
RNA-binding protein 47A
Chr2_+_18727504 1.04 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
Chr5_-_10092686 0.97 AT5G28080.7
AT5G28080.1
AT5G28080.6
AT5G28080.2
AT5G28080.5
AT5G28080.3
AT5G28080.4
AT5G28080.8
WNK9
Protein kinase superfamily protein
Chr5_-_7255944 0.97 AT5G21950.7
AT5G21950.2
AT5G21950.3
AT5G21950.1
AT5G21950.4
AT5G21950.6
AT5G21950.5
AT5G21950
alpha/beta-Hydrolases superfamily protein
Chr1_-_22749199 0.96 AT1G61640.2
AT1G61640.3
AT1G61640.1
AT1G61640
Protein kinase superfamily protein
Chr4_-_14776247 0.95 AT4G30190.1
HA2
H[+]-ATPase 2
Chr3_+_2378219 0.95 AT3G07425.1
AT3G07425
transmembrane protein
Chr4_-_14776058 0.94 AT4G30190.2
HA2
H[+]-ATPase 2
Chr1_-_29239484 0.94 AT1G77760.1
NIA1
nitrate reductase 1
Chr4_+_16746525 0.93 AT4G35190.2
LOG5
Putative lysine decarboxylase family protein
Chr1_-_22417244 0.91 AT1G60890.2
AT1G60890.1
AT1G60890
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr5_+_19116719 0.89 AT5G47060.1
AT5G47060.2
AT5G47060
hypothetical protein (DUF581)
Chr5_+_2167468 0.89 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
Chr4_+_626220 0.88 AT4G01480.2
PPa5
pyrophosphorylase 5
Chr4_+_13675537 0.87 AT4G27310.1
BBX28
B-box type zinc finger family protein
Chr4_+_626069 0.87 AT4G01480.1
PPa5
pyrophosphorylase 5
Chr4_-_16576753 0.86 AT4G34740.1
ASE2
GLN phosphoribosyl pyrophosphate amidotransferase 2
Chr5_-_5310951 0.85 AT5G16250.1
AT5G16250
transmembrane protein
Chr3_-_4834015 0.84 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr3_-_21434648 0.83 AT3G57880.1
AT3G57880.3
AT3G57880.4
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr4_-_11965684 0.83 AT4G22770.2
AT4G22770.1
AT4G22770
AT hook motif DNA-binding family protein
Chr5_-_6591305 0.83 AT5G19530.1
AT5G19530.2
ACL5
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_1268350 0.83 AT3G04670.2
AT3G04670.1
WRKY39
WRKY DNA-binding protein 39
Chr4_+_16746189 0.82 AT4G35190.1
LOG5
Putative lysine decarboxylase family protein
Chr2_-_17087326 0.81 AT2G40940.1
ERS1
ethylene response sensor 1
Chr1_-_30142697 0.80 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_18013252 0.80 AT2G43360.1
BIO2
Radical SAM superfamily protein
Chr3_+_5330194 0.80 AT3G15730.1
PLDALPHA1
phospholipase D alpha 1
Chr5_+_2167120 0.79 AT5G06980.1
AT5G06980
hypothetical protein
Chr5_+_25268950 0.78 AT5G62960.1
AT5G62960.2
AT5G62960
UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein
Chr2_-_15599951 0.77 AT2G37130.2
AT2G37130
Peroxidase superfamily protein
Chr5_+_579744 0.77 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr3_+_1230746 0.77 AT3G04570.1
AHL19
AT-hook motif nuclear-localized protein 19
Chr5_+_3157694 0.77 AT5G10100.1
AT5G10100.3
AT5G10100.4
TPPI
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr3_+_2622849 0.77 AT3G08640.1
AT3G08640
alphavirus core family protein (DUF3411)
Chr2_-_15600154 0.76 AT2G37130.1
AT2G37130
Peroxidase superfamily protein
Chr5_+_22865074 0.75 AT5G56460.1
AT5G56460
Protein kinase superfamily protein
Chr3_-_17519305 0.73 AT3G47530.1
AT3G47530
Pentatricopeptide repeat (PPR) superfamily protein
Chr4_+_16091535 0.72 AT4G33440.1
AT4G33440
Pectin lyase-like superfamily protein
Chr4_-_12254275 0.71 AT4G23490.1
AT4G23490
fringe-like protein (DUF604)
Chr1_+_6688463 0.71 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr3_-_21433954 0.71 AT3G57880.2
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr2_+_11263889 0.70 AT2G26480.1
UGT76D1
UDP-glucosyl transferase 76D1
Chr3_-_4123582 0.70 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
Chr3_+_5539631 0.69 AT3G16340.2
ABCG29
pleiotropic drug resistance 1
Chr3_+_5539385 0.67 AT3G16340.1
ABCG29
pleiotropic drug resistance 1
Chr5_+_5392755 0.67 AT5G16510.1
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr1_-_4882003 0.67 AT1G14290.2
SBH2
sphingoid base hydroxylase 2
Chr1_+_6688698 0.66 AT1G19350.1
AT1G19350.6
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_+_5392576 0.66 AT5G16510.2
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr3_+_16006508 0.66 AT3G44330.1
AT3G44330
M28 Zn-peptidase nicastrin
Chr1_-_4882265 0.65 AT1G14290.1
SBH2
sphingoid base hydroxylase 2
Chr3_+_5234457 0.64 AT3G15500.1
NAC3
NAC domain containing protein 3
Chr3_-_4775258 0.64 AT3G14310.1
PME3
pectin methylesterase 3
Chr5_+_3580396 0.63 AT5G11230.1
AT5G11230
Nucleotide-sugar transporter family protein
Chr5_-_23830520 0.62 AT5G59020.1
AT5G59020
hepatocyte growth factor activator, putative (DUF3527)
Chr5_-_26479577 0.62 AT5G66290.2
AT5G66290.1
AT5G66290.3
AT5G66290
hypothetical protein
Chr3_+_18753541 0.62 AT3G50530.2
CRK
CDPK-related kinase
Chr5_-_990630 0.61 AT5G03760.1
ATCSLA09
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_-_7265851 0.61 AT5G21280.2
AT5G21280.1
AT5G21280
hydroxyproline-rich glycoprotein family protein
Chr1_-_6278150 0.61 AT1G18250.2
AT1G18250.1
ATLP-1
Pathogenesis-related thaumatin superfamily protein
Chr1_-_30202349 0.61 AT1G80340.1
GA3OX2
gibberellin 3-oxidase 2
Chr1_+_7785708 0.61 AT1G22065.1
AT1G22065
hypothetical protein
Chr5_+_16370368 0.60 AT5G40860.2
AT5G40860.1
AT5G40860
transmembrane protein
Chr1_-_1143051 0.60 AT1G04270.2
AT1G04270.1
RPS15
cytosolic ribosomal protein S15
Chr3_+_18753337 0.60 AT3G50530.1
CRK
CDPK-related kinase
Chr3_+_5243432 0.60 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr4_+_8320538 0.59 AT4G14465.1
AHL20
AT-hook motif nuclear-localized protein 20
Chr1_+_27659673 0.59 AT1G73590.1
PIN1
Auxin efflux carrier family protein
Chr5_-_9005941 0.59 AT5G25830.1
GATA12
GATA transcription factor 12
Chr1_-_16689563 0.58 AT1G43980.1
AT1G43980
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_10860668 0.58 AT2G25520.1
AT2G25520
Drug/metabolite transporter superfamily protein
Chr5_-_9944942 0.58 AT5G27920.1
AT5G27920
F-box family protein
Chr3_-_4799612 0.58 AT3G14370.1
WAG2
Protein kinase superfamily protein
Chr3_+_5731519 0.57 AT3G16830.1
TPR2
TOPLESS-related 2
Chr5_-_4560137 0.56 AT5G14130.1
AT5G14130
Peroxidase superfamily protein
Chr4_-_1270539 0.56 AT4G02860.1
AT4G02860
Phenazine biosynthesis PhzC/PhzF protein
Chr4_-_15017365 0.55 AT4G30830.1
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr2_+_10456879 0.54 AT2G24610.1
AT2G24610.2
CNGC14
cyclic nucleotide-gated channel 14
Chr1_+_9531809 0.54 AT1G27450.1
AT1G27450.2
AT1G27450.3
APT1
adenine phosphoribosyl transferase 1
Chr3_-_10047453 0.53 AT3G27210.1
AT3G27210
hypothetical protein
Chr1_+_20048434 0.53 AT1G53700.1
WAG1
WAG 1
Chr4_-_14790501 0.53 AT4G30200.2
AT4G30200.3
AT4G30200.4
AT4G30200.1
VEL1
vernalization5/VIN3-like protein
Chr4_+_15638353 0.52 AT4G32400.1
SHS1
Mitochondrial substrate carrier family protein
Chr1_-_1157786 0.52 AT1G04310.2
AT1G04310.1
ERS2
ethylene response sensor 2
Chr4_+_16135157 0.52 AT4G33560.1
AT4G33560
Wound-responsive family protein
Chr1_+_9532179 0.51 AT1G27450.4
APT1
adenine phosphoribosyl transferase 1
Chr1_-_5104774 0.51 AT1G14810.2
AT1G14810.1
AT1G14810
semialdehyde dehydrogenase family protein
Chr1_+_4989562 0.51 AT1G14580.3
AT1G14580.2
AT1G14580.1
AT1G14580
C2H2-like zinc finger protein
Chr2_+_18007629 0.51 AT2G43340.1
AT2G43340
hypothetical protein (DUF1685)
Chr3_-_15801200 0.51 AT3G44010.2
AT3G44010.1
AT3G44010
Ribosomal protein S14p/S29e family protein
Chr5_-_4560315 0.51 AT5G14130.2
AT5G14130
Peroxidase superfamily protein
Chr1_+_28704963 0.51 AT1G76500.1
SOB3
Putative AT-hook DNA-binding family protein
Chr4_+_12870006 0.50 AT4G25050.2
AT4G25050.1
ACP4
acyl carrier protein 4
Chr1_+_29759030 0.50 AT1G79110.2
AT1G79110.3
AT1G79110.1
BRG2
zinc ion binding protein
Chr1_+_27778984 0.50 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr5_+_3950133 0.50 AT5G12220.1
AT5G12220.2
AT5G12220
las1-like family protein
Chr3_-_11448609 0.49 AT3G29630.2
AT3G29630.1
AT3G29630
UDP-Glycosyltransferase superfamily protein
Chr4_+_12872379 0.49 AT4G25070.2
AT4G25070.1
AT4G25070
caldesmon-like protein
Chr1_+_18701882 0.49 AT1G50480.1
THFS
10-formyltetrahydrofolate synthetase
Chr5_+_7676938 0.48 AT5G22940.2
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr5_+_26510146 0.48 AT5G66360.2
AT5G66360.1
DIM1B
Ribosomal RNA adenine dimethylase family protein
Chr2_+_100484 0.48 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr5_-_25902127 0.48 AT5G64780.1
AT5G64780
holocarboxylase synthetase
Chr2_+_12744116 0.48 AT2G29890.4
AT2G29890.1
AT2G29890.2
AT2G29890.3
AT2G29890.5
VLN1
villin-like 1
Chr3_+_3318975 0.47 AT3G10610.1
AT3G10610
Ribosomal S17 family protein
Chr1_+_16155278 0.47 AT1G43020.1
AT1G43020.3
AT1G43020.4
AT1G43020.5
AT1G43020.2
AT1G43020
electron protein, putative (Protein of unknown function, DUF547)
Chr3_-_7412457 0.47 AT3G21140.1
AT3G21140
Pyridoxamine 5'-phosphate oxidase family protein
Chr3_-_3919359 0.46 AT3G12280.1
RBR1
retinoblastoma-related 1
Chr2_+_14493571 0.46 AT2G34350.2
AT2G34350
Nodulin-like / Major Facilitator Superfamily protein
Chr3_-_3919170 0.46 AT3G12280.2
RBR1
retinoblastoma-related 1
Chr1_+_8441073 0.46 AT1G23900.3
AT1G23900.2
AT1G23900.1
GAMMA-ADAPTIN 1
gamma-adaptin 1
Chr5_+_7676662 0.45 AT5G22940.1
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr4_-_1140491 0.45 AT4G02590.2
AT4G02590.3
AT4G02590.1
UNE12
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_4817981 0.45 AT3G14410.1
AT3G14410
Nucleotide/sugar transporter family protein
Chr2_-_16846194 0.45 AT2G40330.1
PYL6
PYR1-like 6
Chr1_+_8962087 0.44 AT1G25520.1
AT1G25520
Uncharacterized protein family (UPF0016)
Chr3_-_4571260 0.44 AT3G13870.2
AT3G13870.1
RHD3
Root hair defective 3 GTP-binding protein (RHD3)
Chr3_+_20890235 0.44 AT3G56330.1
AT3G56330
N2,N2-dimethylguanosine tRNA methyltransferase
Chr1_+_7324471 0.44 AT1G20980.1
SPL14
squamosa promoter binding protein-like 14
Chr5_+_24396981 0.44 AT5G60690.1
REV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr5_+_25703649 0.43 AT5G64260.1
EXL2
EXORDIUM like 2
Chr3_+_22979848 0.43 AT3G62060.1
AT3G62060.2
AT3G62060
Pectinacetylesterase family protein
Chr2_+_6758681 0.43 AT2G15480.2
UGT73B5
UDP-glucosyl transferase 73B5
Chr5_-_23792382 0.43 AT5G58910.2
LAC16
laccase 16
Chr2_+_14493308 0.42 AT2G34350.1
AT2G34350
Nodulin-like / Major Facilitator Superfamily protein
Chr4_-_15016977 0.42 AT4G30830.2
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr1_-_7267354 0.42 AT1G20890.2
AT1G20890.1
AT1G20890
caveolin-1 protein
Chr3_-_7993588 0.42 AT3G22550.1
AT3G22550
NAD(P)H-quinone oxidoreductase subunit, putative (DUF581)
Chr1_+_6594883 0.41 AT1G19100.1
DMS11
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr3_-_16037216 0.41 AT3G44380.1
AT3G44380
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_-_25727386 0.41 AT1G68550.2
CRF10
Integrase-type DNA-binding superfamily protein
Chr1_+_23769774 0.41 AT1G64060.1
RBOH F
respiratory burst oxidase protein F
Chr3_+_4128334 0.41 AT3G12930.1
AT3G12930
Lojap-related protein
Chr2_-_17427282 0.41 AT2G41770.1
AT2G41770
transmembrane protein, putative (DUF288)
Chr5_-_16622719 0.41 AT5G41560.2
AT5G41560.1
AT5G41560
DET1 complexing ubiquitin ligase
Chr1_-_25727701 0.40 AT1G68550.1
CRF10
Integrase-type DNA-binding superfamily protein
Chr1_+_3715084 0.40 AT1G11120.2
AT1G11120.1
AT1G11120
CTTNBP 2 amino-terminal-like protein
Chr4_+_17305758 0.40 AT4G36710.1
HAM4
GRAS family transcription factor
Chr1_+_10758743 0.40 AT1G30440.1
AT1G30440
Phototropic-responsive NPH3 family protein
Chr5_-_3423299 0.40 AT5G10820.1
AT5G10820
Major facilitator superfamily protein
Chr2_-_12857727 0.40 AT2G30110.1
UBA1
ubiquitin-activating enzyme 1
Chr5_+_4782909 0.39 AT5G14790.1
AT5G14790
ARM repeat superfamily protein
Chr5_+_4292704 0.39 AT5G13390.1
AT5G13390.2
NEF1
no exine formation 1
Chr1_-_1829890 0.39 AT1G06040.2
AT1G06040.1
STO
B-box zinc finger family protein
Chr1_-_26042741 0.39 AT1G69270.1
RPK1
receptor-like protein kinase 1
Chr4_+_1249971 0.38 AT4G02800.1
AT4G02800
GRIP/coiled-coil protein
Chr4_-_18049700 0.38 AT4G38600.1
AT4G38600.3
KAK
HECT ubiquitin protein ligase family protein KAK
Chr2_+_9995465 0.38 AT2G23460.1
XLG1
extra-large G-protein 1
Chr2_+_13977881 0.38 AT2G32950.1
AT2G32950.2
COP1
Transducin/WD40 repeat-like superfamily protein
Chr1_-_27185883 0.38 AT1G72220.1
AT1G72220
RING/U-box superfamily protein
Chr3_+_22670729 0.37 AT3G61250.1
MYB17
myb domain protein 17
Chr4_-_18049252 0.37 AT4G38600.2
KAK
HECT ubiquitin protein ligase family protein KAK
Chr5_-_23792112 0.37 AT5G58910.3
LAC16
laccase 16
Chr5_-_7083226 0.37 AT5G20880.1
AT5G20880

Chr4_+_15885520 0.37 AT4G32915.1
AT4G32915
glutamyl-tRNA(Gln) amidotransferase subunit C
Chr4_+_18530318 0.36 AT4G39955.1
AT4G39955
alpha/beta-Hydrolases superfamily protein
Chr1_+_4991033 0.36 AT1G14580.4
AT1G14580
C2H2-like zinc finger protein
Chr3_+_17087538 0.36 AT3G46430.1
AT3G46430
ATP synthase
Chr5_+_25537074 0.36 AT5G63810.1
BGAL10
beta-galactosidase 10
Chr3_-_5804210 0.35 AT3G17020.2
AT3G17020.1
AT3G17020
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr2_-_2843338 0.35 AT2G06925.2
AT2G06925.1
PLA2-ALPHA
Phospholipase A2 family protein
Chr5_-_23791681 0.35 AT5G58910.1
LAC16
laccase 16
Chr1_+_16739192 0.35 AT1G44050.1
AT1G44050
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_27372197 0.35 AT1G72710.1
CKL2
casein kinase 1-like protein 2
Chr3_+_20251812 0.35 AT3G54710.1
CDT1B
CDT1-like protein B
Chr4_-_17431685 0.35 AT4G36970.1
AT4G36970
Remorin family protein
Chr2_+_9488413 0.34 AT2G22330.2
AT2G22330.1
CYP79B3
cytochrome P450, family 79, subfamily B, polypeptide 3
Chr3_+_10073082 0.34 AT3G27270.1
AT3G27270
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Chr3_+_5183641 0.33 AT3G15355.1
UBC25
ubiquitin-conjugating enzyme 25
Chr2_-_11236995 0.33 AT2G26410.1
AT2G26410.2
Iqd4
IQ-domain 4
Chr5_+_4591690 0.33 AT5G14230.1
AT5G14230
ankyrin
Chr5_+_23477411 0.33 AT5G58000.1
AT5G58000
Reticulon family protein
Chr5_+_19549676 0.33 AT5G48220.3
AT5G48220.4
AT5G48220.2
AT5G48220.1
AT5G48220
Aldolase-type TIM barrel family protein
Chr2_+_8858962 0.33 AT2G20580.1
RPN1A
26S proteasome regulatory subunit S2 1A
Chr1_+_27054030 0.33 AT1G71880.1
SUC1
sucrose-proton symporter 1
Chr4_+_12954077 0.32 AT4G25320.1
AT4G25320
AT hook motif DNA-binding family protein
Chr3_-_21720053 0.32 AT3G58730.1
AT3G58730
vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G69690

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0006659 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.6 2.5 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.5 3.1 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.3 0.9 GO:2000045 guard cell fate commitment(GO:0010377) regulation of G1/S transition of mitotic cell cycle(GO:2000045) regulation of genetic imprinting(GO:2000653)
0.3 1.4 GO:0009647 skotomorphogenesis(GO:0009647)
0.3 2.4 GO:0010230 alternative respiration(GO:0010230)
0.2 1.7 GO:0019320 hexose catabolic process(GO:0019320)
0.2 1.1 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.2 1.4 GO:1904961 quiescent center organization(GO:1904961)
0.2 0.6 GO:0046102 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.2 0.8 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.2 0.9 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.2 0.6 GO:0071763 nuclear membrane organization(GO:0071763)
0.2 0.5 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.2 0.4 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.2 0.6 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 1.4 GO:0010358 leaf shaping(GO:0010358)
0.1 5.5 GO:0055072 iron ion homeostasis(GO:0055072)
0.1 1.9 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.1 0.4 GO:0009945 radial axis specification(GO:0009945)
0.1 0.6 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.4 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.1 1.3 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.1 0.3 GO:0010433 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.1 0.5 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.1 0.8 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 1.7 GO:0016024 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 1.1 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.1 1.4 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.1 0.5 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.1 0.4 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.1 0.5 GO:0046085 adenosine metabolic process(GO:0046085)
0.1 1.3 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.1 0.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 1.6 GO:1905177 tracheary element differentiation(GO:1905177)
0.1 0.4 GO:0050482 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.1 1.3 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.1 0.3 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 1.9 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.1 0.3 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.3 GO:0015959 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.1 0.2 GO:0010024 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.1 0.9 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 0.2 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.1 0.5 GO:0009097 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.1 1.2 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.1 0.2 GO:0018279 peptidyl-asparagine modification(GO:0018196) protein N-linked glycosylation via asparagine(GO:0018279)
0.1 0.4 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.1 1.0 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 3.4 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.0 0.6 GO:0080060 seed morphogenesis(GO:0048317) integument development(GO:0080060)
0.0 0.1 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.0 0.6 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 0.2 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414) mitochondrial tRNA processing(GO:0090646)
0.0 0.2 GO:0060919 auxin influx(GO:0060919)
0.0 0.5 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.0 0.4 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 0.1 GO:0030834 regulation of actin filament depolymerization(GO:0030834)
0.0 0.7 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 1.2 GO:0006284 base-excision repair(GO:0006284)
0.0 0.1 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.4 GO:0006450 regulation of translational fidelity(GO:0006450)
0.0 0.3 GO:0006183 GTP biosynthetic process(GO:0006183)
0.0 0.5 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.0 0.3 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 2.8 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 0.1 GO:0060151 peroxisome localization(GO:0060151)
0.0 0.7 GO:0046219 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 0.1 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.0 0.5 GO:0006898 receptor-mediated endocytosis(GO:0006898)
0.0 0.2 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.1 GO:0071217 response to cycloheximide(GO:0046898) positive regulation of unidimensional cell growth(GO:0051512) cellular response to external biotic stimulus(GO:0071217)
0.0 0.4 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.8 GO:0010091 trichome branching(GO:0010091)
0.0 0.2 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.1 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.2 GO:0010088 phloem development(GO:0010088)
0.0 0.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.5 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.6 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 1.1 GO:0048825 cotyledon development(GO:0048825)
0.0 0.1 GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.0 0.5 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.4 GO:0009269 response to desiccation(GO:0009269)
0.0 1.0 GO:0009749 response to glucose(GO:0009749)
0.0 0.5 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 1.5 GO:1900140 regulation of seedling development(GO:1900140)
0.0 0.1 GO:0010450 inflorescence meristem growth(GO:0010450)
0.0 0.2 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.5 GO:0006862 nucleotide transport(GO:0006862)
0.0 0.3 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.5 GO:0010346 morphogenesis of a branching structure(GO:0001763) secondary shoot formation(GO:0010223) shoot axis formation(GO:0010346)
0.0 0.2 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.0 0.1 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.2 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.8 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 0.1 GO:0046900 tetrahydrofolylpolyglutamate metabolic process(GO:0046900)
0.0 0.2 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 0.3 GO:0006835 dicarboxylic acid transport(GO:0006835)
0.0 0.1 GO:0070813 hydrogen sulfide metabolic process(GO:0070813)
0.0 0.6 GO:0010114 response to red light(GO:0010114)
0.0 0.2 GO:0032886 regulation of microtubule-based process(GO:0032886)
0.0 0.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.1 GO:0080119 ER body organization(GO:0080119)
0.0 0.3 GO:0071230 cellular response to amino acid stimulus(GO:0071230)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.4 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.2 0.6 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 0.5 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.1 0.5 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.1 1.2 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 0.6 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.1 0.3 GO:0010330 cellulose synthase complex(GO:0010330)
0.1 0.3 GO:0034515 proteasome storage granule(GO:0034515)
0.1 1.3 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.1 GO:0012510 trans-Golgi network transport vesicle membrane(GO:0012510)
0.0 0.4 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.5 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 0.6 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.1 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.2 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.4 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.2 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.5 GO:0033176 proton-transporting V-type ATPase complex(GO:0033176)
0.0 2.6 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 0.1 GO:0005884 actin filament(GO:0005884)
0.0 2.3 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.4 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 0.0 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.2 GO:0072686 mitotic spindle(GO:0072686)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.5 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.5 2.1 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.5 3.1 GO:0019904 protein domain specific binding(GO:0019904)
0.5 2.4 GO:0003680 AT DNA binding(GO:0003680)
0.4 1.3 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.4 1.7 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.4 4.6 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.3 0.9 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.3 2.4 GO:0009916 alternative oxidase activity(GO:0009916)
0.3 0.9 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.3 1.3 GO:0038199 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.2 1.3 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.2 1.7 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 0.6 GO:0050263 uridine nucleosidase activity(GO:0045437) ribosylpyrimidine nucleosidase activity(GO:0050263)
0.2 0.8 GO:0070283 radical SAM enzyme activity(GO:0070283)
0.2 0.5 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.2 0.9 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.2 0.5 GO:0098748 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.1 1.1 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.4 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.1 0.8 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.7 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.1 1.2 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.4 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.1 0.4 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.4 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.1 1.1 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 0.8 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)
0.1 0.4 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.1 0.4 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.3 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.1 0.4 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.4 GO:0016768 spermine synthase activity(GO:0016768)
0.1 0.4 GO:0031683 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.1 0.9 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.1 2.5 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.9 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.1 0.8 GO:0070300 phosphatidic acid binding(GO:0070300)
0.1 0.3 GO:0017077 oxoglutarate:malate antiporter activity(GO:0015367) oxidative phosphorylation uncoupler activity(GO:0017077)
0.1 0.9 GO:0051879 Hsp90 protein binding(GO:0051879)
0.1 1.3 GO:0008143 poly(A) binding(GO:0008143)
0.1 1.2 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 0.3 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.2 GO:0010331 gibberellin binding(GO:0010331)
0.1 0.6 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.1 0.6 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.8 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.9 GO:0019902 phosphatase binding(GO:0019902)
0.0 0.2 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.2 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.0 0.2 GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473)
0.0 0.5 GO:0051192 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.0 0.3 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.5 GO:0035064 methylated histone binding(GO:0035064)
0.0 1.9 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799)
0.0 0.3 GO:0036442 hydrogen-exporting ATPase activity(GO:0036442)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 1.2 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 0.1 GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.0 2.1 GO:0004601 peroxidase activity(GO:0004601)
0.0 0.1 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.0 0.6 GO:0022843 voltage-gated cation channel activity(GO:0022843)
0.0 0.7 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.2 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 0.3 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.5 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.8 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.3 GO:0008066 glutamate receptor activity(GO:0008066)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 PID ENDOTHELIN PATHWAY Endothelins
0.1 0.6 PID MYC PATHWAY C-MYC pathway
0.1 0.2 PID TRKR PATHWAY Neurotrophic factor-mediated Trk receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS Genes involved in p130Cas linkage to MAPK signaling for integrins
0.1 0.6 REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES Genes involved in Antiviral mechanism by IFN-stimulated genes
0.1 0.2 REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR Genes involved in Downstream signaling of activated FGFR
0.0 0.4 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation
0.0 0.6 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME DEADENYLATION DEPENDENT MRNA DECAY Genes involved in Deadenylation-dependent mRNA decay