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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69690
Z-value: 1.01
Transcription factors associated with AT1G69690
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69690
|
AT1G69690 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP15 | arTal_v1_Chr1_+_26216009_26216009 | 0.58 | 2.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 3.00 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 2.98 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 2.77 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 2.76 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 2.51 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 2.07 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr5_+_22388782_22388782 Show fit | 1.81 |
AT5G55180.2
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr5_+_22388521_22388521 Show fit | 1.76 |
AT5G55180.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr1_-_3167924_3167924 Show fit | 1.71 |
AT1G09780.1
|
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent |
|
| arTal_v1_Chr3_+_3595694_3595694 Show fit | 1.71 |
AT3G11430.1
|
glycerol-3-phosphate acyltransferase 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69690
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 3.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.5 | 3.1 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.0 | 2.8 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.6 | 2.5 | GO:0072351 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
| 0.3 | 2.4 | GO:0010230 | alternative respiration(GO:0010230) |
| 0.7 | 2.1 | GO:0006659 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
| 0.1 | 1.9 | GO:0009113 | purine nucleobase biosynthetic process(GO:0009113) |
| 0.1 | 1.9 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.2 | 1.7 | GO:0019320 | hexose catabolic process(GO:0019320) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.6 | 2.4 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
| 0.0 | 2.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 1.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 1.2 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.2 | 0.6 | GO:0009925 | basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178) |
| 0.1 | 0.6 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.0 | 0.6 | GO:0034399 | nuclear periphery(GO:0034399) |
| 0.1 | 0.5 | GO:0031357 | intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357) |
| 0.1 | 0.5 | GO:0030130 | clathrin coat of trans-Golgi network vesicle(GO:0030130) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 4.6 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.5 | 3.1 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.6 | 2.5 | GO:0030410 | nicotianamine synthase activity(GO:0030410) |
| 0.1 | 2.5 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.5 | 2.4 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.3 | 2.4 | GO:0009916 | alternative oxidase activity(GO:0009916) |
| 0.5 | 2.1 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
| 0.0 | 2.1 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 1.9 | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds(GO:0016799) |
| 0.4 | 1.7 | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | PID ENDOTHELIN PATHWAY | Endothelins |
| 0.1 | 0.6 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.2 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.1 | 0.6 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.2 | REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | Genes involved in Downstream signaling of activated FGFR |
| 0.0 | 0.1 | REACTOME DEADENYLATION DEPENDENT MRNA DECAY | Genes involved in Deadenylation-dependent mRNA decay |