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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69570
Z-value: 0.72
Transcription factors associated with AT1G69570
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69570
|
AT1G69570 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G69570 | arTal_v1_Chr1_-_26163715_26163715 | 0.36 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.05 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 0.90 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 0.76 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 0.75 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 0.75 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 0.75 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr3_+_3923735_3923735 Show fit | 0.58 |
AT3G12320.2
|
hypothetical protein |
|
| arTal_v1_Chr3_+_3923515_3923515 Show fit | 0.56 |
AT3G12320.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_489467_489467 Show fit | 0.54 |
AT3G02380.1
|
CONSTANS-like 2 |
|
| arTal_v1_Chr3_+_3923969_3923969 Show fit | 0.54 |
AT3G12320.3
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69570
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0009909 | regulation of flower development(GO:0009909) |
| 0.3 | 1.6 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 1.3 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 1.2 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 1.2 | GO:0042752 | regulation of circadian rhythm(GO:0042752) |
| 0.1 | 1.1 | GO:0010555 | response to mannitol(GO:0010555) |
| 0.0 | 0.9 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.0 | 0.8 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.0 | 0.7 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.1 | 0.6 | GO:0006878 | cellular copper ion homeostasis(GO:0006878) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.7 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 0.5 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.1 | 0.4 | GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063) |
| 0.0 | 0.4 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.4 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.0 | 0.4 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.3 | GO:0000813 | ESCRT I complex(GO:0000813) |
| 0.0 | 0.3 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 0.2 | GO:0016328 | lateral plasma membrane(GO:0016328) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 1.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 1.3 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.1 | 1.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.3 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 1.2 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.0 | 1.0 | GO:0080161 | auxin transmembrane transporter activity(GO:0080161) |
| 0.0 | 0.9 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 0.7 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.0 | 0.7 | GO:0045309 | protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.2 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 0.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 0.3 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.0 | 0.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.0 | 0.1 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
| 0.0 | 0.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.1 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.0 | 0.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |