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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69490
Z-value: 0.93
Transcription factors associated with AT1G69490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69490
|
AT1G69490 | NAC-like, activated by AP3/PI |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAP | arTal_v1_Chr1_+_26122080_26122080 | 0.63 | 1.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_538250_538250 Show fit | 1.99 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 1.57 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.55 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_-_8444101_8444101 Show fit | 1.32 |
AT5G24660.1
|
response to low sulfur 2 |
|
| arTal_v1_Chr5_-_5177897_5177897 Show fit | 1.27 |
AT5G15850.1
|
CONSTANS-like 1 |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 1.25 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr2_+_1993038_1993084 Show fit | 1.22 |
AT2G05440.2
AT2G05440.9 AT2G05440.5 AT2G05440.1 AT2G05440.6 AT2G05440.3 AT2G05440.4 AT2G05440.8 AT2G05440.7 |
GLYCINE RICH PROTEIN 9 |
|
| arTal_v1_Chr4_+_11854809_11854809 Show fit | 1.19 |
AT4G22513.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_17475274_17475274 Show fit | 1.19 |
AT3G47420.3
AT3G47420.1 AT3G47420.2 |
putative glycerol-3-phosphate transporter 1 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 1.18 |
AT2G44460.1
|
beta glucosidase 28 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.9 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.1 | 2.5 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.3 | 2.4 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.5 | 2.3 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 2.3 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.4 | 2.1 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 2.1 | GO:0009909 | regulation of flower development(GO:0009909) |
| 0.3 | 1.9 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.0 | 1.9 | GO:0048506 | regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510) |
| 0.4 | 1.8 | GO:0034763 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 28.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 7.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 6.2 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 2.8 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 2.6 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 2.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.2 | 2.3 | GO:0031519 | PcG protein complex(GO:0031519) |
| 0.1 | 2.1 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 1.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 5.3 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.1 | 4.0 | GO:0080043 | quercetin 3-O-glucosyltransferase activity(GO:0080043) |
| 0.0 | 3.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 3.3 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.5 | 3.0 | GO:0070547 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.0 | 2.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.1 | 2.8 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
| 0.0 | 2.7 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 2.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.3 | 0.9 | PID ENDOTHELIN PATHWAY | Endothelins |
| 0.3 | 0.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 0.5 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.0 | 0.4 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.0 | 1.2 | REACTOME TRANSMEMBRANE TRANSPORT OF SMALL MOLECULES | Genes involved in Transmembrane transport of small molecules |
| 0.3 | 0.9 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.3 | 0.8 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 0.6 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 0.5 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.5 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.4 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |