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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69180
Z-value: 1.95
Transcription factors associated with AT1G69180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69180
|
AT1G69180 | Plant-specific transcription factor YABBY family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CRC | arTal_v1_Chr1_-_26009141_26009141 | -0.21 | 4.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 3.12 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 3.04 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 2.82 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 2.37 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 2.32 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr2_+_12004658_12004700 Show fit | 2.24 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
|
| arTal_v1_Chr5_-_16252434_16252434 Show fit | 2.05 |
AT5G40590.1
|
Cysteine/Histidine-rich C1 domain family protein |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 2.00 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr5_+_19481897_19481897 Show fit | 1.97 |
AT5G48070.1
|
xyloglucan endotransglucosylase/hydrolase 20 |
|
| arTal_v1_Chr4_+_10703348_10703348 Show fit | 1.93 |
AT4G19680.1
AT4G19680.2 |
iron regulated transporter 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.5 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 7.4 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 6.1 | GO:0010054 | trichoblast differentiation(GO:0010054) |
| 0.1 | 5.5 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 5.2 | GO:0006364 | rRNA processing(GO:0006364) |
| 0.1 | 4.3 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 1.0 | 4.1 | GO:0072351 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
| 0.1 | 3.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 3.6 | GO:0016311 | dephosphorylation(GO:0016311) |
| 0.1 | 3.4 | GO:0042631 | cellular response to water deprivation(GO:0042631) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 31.3 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 28.9 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 21.2 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 10.2 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 9.4 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 9.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 5.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 4.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 4.1 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 3.4 | GO:0099503 | secretory vesicle(GO:0099503) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 7.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.0 | 6.6 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.0 | 5.0 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.9 | 4.6 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.2 | 4.4 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 4.2 | GO:0030145 | manganese ion binding(GO:0030145) |
| 1.0 | 4.1 | GO:0030410 | nicotianamine synthase activity(GO:0030410) |
| 0.2 | 4.0 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.0 | 3.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.2 | 1.1 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
| 0.3 | 1.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.2 | 0.7 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.7 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.6 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.4 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.2 | 0.4 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.4 | 1.1 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.3 | 1.1 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.3 | 1.0 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.9 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.7 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.2 | 0.6 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.2 | 0.6 | REACTOME SIGNALING BY SCF KIT | Genes involved in Signaling by SCF-KIT |
| 0.1 | 0.6 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |