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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G69010
Z-value: 1.73
Transcription factors associated with AT1G69010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69010
|
AT1G69010 | BES1-interacting Myc-like protein 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BIM2 | arTal_v1_Chr1_+_25941629_25941629 | -0.61 | 2.0e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.29 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.29 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.15 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 1.92 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.87 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.82 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.76 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr2_-_6960216_6960216 Show fit | 1.74 |
AT2G16005.1
|
MD-2-related lipid recognition domain-containing protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.74 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.72 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 6.5 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 6.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 5.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 4.7 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.2 | 4.6 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 4.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 4.3 | GO:0009695 | jasmonic acid biosynthetic process(GO:0009695) |
| 0.1 | 4.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.0 | 4.0 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 4.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 62.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 7.7 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 7.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 2.7 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 2.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.8 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.5 | GO:0000145 | exocyst(GO:0000145) |
| 0.4 | 1.4 | GO:0031314 | extrinsic component of mitochondrial inner membrane(GO:0031314) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 6.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 6.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 5.1 | GO:0020037 | heme binding(GO:0020037) |
| 0.5 | 5.0 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 4.9 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 0.1 | 4.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 4.6 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 4.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 4.0 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 4.0 | GO:0004601 | peroxidase activity(GO:0004601) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 6.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.2 | 1.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 1.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.4 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.7 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.7 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 6.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 0.9 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.1 | 0.7 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.6 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.6 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION | Genes involved in Class I MHC mediated antigen processing & presentation |
| 0.1 | 0.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |