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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G65910
Z-value: 1.29
Transcription factors associated with AT1G65910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G65910
|
AT1G65910 | NAC domain containing protein 28 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC028 | arTal_v1_Chr1_-_24524260_24524260 | -0.56 | 3.9e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_23308680_23308680 Show fit | 2.59 |
AT5G57560.1
|
Xyloglucan endotransglucosylase/hydrolase family protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 2.08 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr1_-_7388512_7388512 Show fit | 2.07 |
AT1G21100.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr3_-_3993886_3993886 Show fit | 1.99 |
AT3G12580.1
|
heat shock protein 70 |
|
| arTal_v1_Chr4_+_12137995_12138137 Show fit | 1.96 |
AT4G23180.1
AT4G23180.3 AT4G23180.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 10 |
|
| arTal_v1_Chr2_+_12588191_12588197 Show fit | 1.91 |
AT2G29300.2
AT2G29300.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 1.89 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 1.82 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr3_+_16789780_16789780 Show fit | 1.79 |
AT3G45730.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_17571743_17571743 Show fit | 1.79 |
AT4G37370.1
|
cytochrome P450, family 81, subfamily D, polypeptide 8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G65910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 4.7 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 4.3 | GO:0009860 | pollen tube growth(GO:0009860) |
| 0.6 | 3.7 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 3.5 | GO:0009612 | response to mechanical stimulus(GO:0009612) |
| 0.2 | 3.4 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
| 0.6 | 3.0 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.0 | 3.0 | GO:0009875 | pollen-pistil interaction(GO:0009875) |
| 0.2 | 2.9 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.3 | 2.8 | GO:0070370 | cellular heat acclimation(GO:0070370) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.8 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 5.6 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 5.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 2.2 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.1 | 2.1 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.0 | 2.1 | GO:0005811 | lipid particle(GO:0005811) |
| 0.5 | 1.9 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.1 | 1.9 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.1 | 1.8 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 1.7 | GO:0031201 | SNARE complex(GO:0031201) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.7 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 3.5 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.6 | 3.0 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.0 | 2.6 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 2.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 2.3 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 2.3 | GO:0005484 | SNAP receptor activity(GO:0005484) |
| 0.0 | 2.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 2.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 2.2 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.9 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.5 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.0 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.4 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 0.3 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.3 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.1 | 0.3 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.1 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.2 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.0 | 0.2 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |