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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G63030
Z-value: 0.79
Transcription factors associated with AT1G63030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G63030
|
AT1G63030 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ddf2 | arTal_v1_Chr1_-_23368369_23368416 | -0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 2.56 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 2.40 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr4_+_14954204_14954204 Show fit | 2.16 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_+_18940643_18940643 Show fit | 1.92 |
AT3G50970.1
|
dehydrin family protein |
|
| arTal_v1_Chr5_+_5211719_5211719 Show fit | 1.91 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
|
| arTal_v1_Chr2_-_12415661_12415661 Show fit | 1.72 |
AT2G28900.1
|
outer plastid envelope protein 16-1 |
|
| arTal_v1_Chr1_-_30142697_30142697 Show fit | 1.27 |
AT1G80130.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 1.20 |
AT1G20440.1
|
cold-regulated 47 |
|
| arTal_v1_Chr1_+_29356346_29356382 Show fit | 1.15 |
AT1G78070.2
AT1G78070.3 |
Transducin/WD40 repeat-like superfamily protein |
|
| arTal_v1_Chr1_+_29354944_29354944 Show fit | 1.09 |
AT1G78070.1
|
Transducin/WD40 repeat-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G63030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.0 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 4.2 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.1 | 1.9 | GO:0045037 | protein import into chloroplast stroma(GO:0045037) |
| 0.0 | 1.8 | GO:0009644 | response to high light intensity(GO:0009644) |
| 0.1 | 1.0 | GO:0006168 | adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096) |
| 0.2 | 0.8 | GO:0010507 | negative regulation of autophagy(GO:0010507) |
| 0.1 | 0.8 | GO:0006002 | fructose 6-phosphate metabolic process(GO:0006002) |
| 0.0 | 0.8 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.0 | 0.8 | GO:0009696 | salicylic acid metabolic process(GO:0009696) |
| 0.0 | 0.8 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0009527 | plastid outer membrane(GO:0009527) |
| 0.0 | 2.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 0.8 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 0.5 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
| 0.1 | 0.5 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.0 | 0.4 | GO:0000178 | exosome (RNase complex)(GO:0000178) |
| 0.0 | 0.2 | GO:0005750 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 5.0 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.0 | 1.6 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
| 0.1 | 1.2 | GO:0017091 | AU-rich element binding(GO:0017091) |
| 0.1 | 1.0 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.2 | 0.8 | GO:0050284 | sinapate 1-glucosyltransferase activity(GO:0050284) |
| 0.1 | 0.8 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
| 0.0 | 0.8 | GO:0080031 | methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032) |
| 0.0 | 0.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 0.6 | GO:0030943 | mitochondrion targeting sequence binding(GO:0030943) |
| 0.1 | 0.5 | GO:0080103 | 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |