GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G61730
|
AT1G61730 | DNA-binding storekeeper protein-related transcriptional regulator |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT1G61730 | arTal_v1_Chr1_-_22794714_22794714 | 0.42 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
Chr4_+_13283526 | 0.42 |
AT4G26220.1
|
AT4G26220
|
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Chr5_-_5741500 | 0.37 |
AT5G17420.1
|
IRX3
|
Cellulose synthase family protein |
Chr2_-_17060652 | 0.27 |
AT2G40890.1
|
CYP98A3
|
cytochrome P450, family 98, subfamily A, polypeptide 3 |
Chr5_+_5084524 | 0.25 |
AT5G15630.1
AT5G15630.2 AT5G15630.3 AT5G15630.4 AT5G15630.5 |
IRX6
|
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family |
Chr4_-_16063070 | 0.22 |
AT4G33330.2
AT4G33330.1 AT4G33330.5 AT4G33330.3 AT4G33330.4 |
PGSIP3
|
plant glycogenin-like starch initiation protein 3 |
Chr2_-_12996012 | 0.22 |
AT2G30490.1
|
C4H
|
cinnamate-4-hydroxylase |
Chr5_+_17714390 | 0.17 |
AT5G44030.2
AT5G44030.1 |
CESA4
|
cellulose synthase A4 |
Chr1_+_4374205 | 0.17 |
AT1G12840.1
|
DET3
|
vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) |
Chr1_-_19161552 | 0.15 |
AT1G51680.3
AT1G51680.2 |
4CL1
|
4-coumarate:CoA ligase 1 |
Chr1_-_19161737 | 0.14 |
AT1G51680.1
|
4CL1
|
4-coumarate:CoA ligase 1 |
Chr1_-_9531489 | 0.14 |
AT1G27440.1
|
GUT2
|
Exostosin family protein |
Chr1_+_23337167 | 0.13 |
AT1G62990.1
|
KNAT7
|
homeobox knotted-like protein |
Chr1_+_3111694 | 0.12 |
AT1G09610.1
|
GXM3
|
glucuronoxylan 4-O-methyltransferase-like protein (DUF579) |
Chr3_-_6421983 | 0.12 |
AT3G18660.1
AT3G18660.3 AT3G18660.2 |
PGSIP1
|
plant glycogenin-like starch initiation protein 1 |
Chr1_+_17634697 | 0.11 |
AT1G47870.1
AT1G47870.2 |
ATE2F2
|
winged-helix DNA-binding transcription factor family protein |
Chr3_-_2578276 | 0.08 |
AT3G08500.1
|
MYB83
|
myb domain protein 83 |
Chr5_+_17715687 | 0.08 |
AT5G44030.3
|
CESA4
|
cellulose synthase A4 |
Chr5_+_24396981 | 0.02 |
AT5G60690.1
|
REV
|
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Chr1_+_5478603 | 0.01 |
AT1G15950.1
|
CCR1
|
cinnamoyl coa reductase 1 |
Chr1_+_5479287 | 0.01 |
AT1G15950.7
|
CCR1
|
cinnamoyl coa reductase 1 |
Chr1_+_5478754 | 0.00 |
AT1G15950.6
AT1G15950.5 AT1G15950.4 AT1G15950.3 AT1G15950.2 |
CCR1
|
cinnamoyl coa reductase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.3 | GO:0009805 | coumarin biosynthetic process(GO:0009805) |
0.1 | 0.4 | GO:0010395 | rhamnogalacturonan I metabolic process(GO:0010395) |
0.0 | 0.5 | GO:0010417 | glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417) |
0.0 | 0.1 | GO:0043618 | regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618) |
0.0 | 0.2 | GO:0052324 | plant-type cell wall cellulose biosynthetic process(GO:0052324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | GO:0010330 | cellulose synthase complex(GO:0010330) |
0.0 | 0.2 | GO:0033180 | proton-transporting V-type ATPase, V1 domain(GO:0033180) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | GO:0080116 | glucuronoxylan glucuronosyltransferase activity(GO:0080116) |
0.1 | 0.3 | GO:0046409 | p-coumarate 3-hydroxylase activity(GO:0046409) |
0.0 | 0.3 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
0.0 | 0.6 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |