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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G55110
Z-value: 1.10
Transcription factors associated with AT1G55110
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G55110
|
AT1G55110 | indeterminate(ID)-domain 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| IDD7 | arTal_v1_Chr1_-_20563269_20563269 | 0.51 | 6.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 1.98 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr2_+_13381767_13381767 Show fit | 1.39 |
AT2G31380.1
|
salt tolerance homologue |
|
| arTal_v1_Chr4_-_18472048_18472048 Show fit | 1.36 |
AT4G39800.1
|
myo-inositol-1-phosphate synthase 1 |
|
| arTal_v1_Chr1_-_29459493_29459493 Show fit | 1.22 |
AT1G78290.2
AT1G78290.3 |
Protein kinase superfamily protein |
|
| arTal_v1_Chr2_+_1966806_1966816 Show fit | 1.18 |
AT2G05380.1
AT2G05380.2 |
glycine-rich protein 3 short isoform |
|
| arTal_v1_Chr2_+_1966610_1966610 Show fit | 1.16 |
AT2G05380.3
|
glycine-rich protein 3 short isoform |
|
| arTal_v1_Chr3_+_5720941_5721030 Show fit | 1.08 |
AT3G16800.5
AT3G16800.4 AT3G16800.2 AT3G16800.6 AT3G16800.1 |
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr2_+_12004658_12004700 Show fit | 1.07 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
|
| arTal_v1_Chr2_+_10244745_10244745 Show fit | 1.04 |
AT2G24100.1
|
ATP-dependent DNA helicase |
|
| arTal_v1_Chr3_-_5173001_5173105 Show fit | 0.98 |
AT3G15354.4
AT3G15354.1 AT3G15354.2 AT3G15354.3 |
SPA1-related 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G55110
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.2 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.0 | 2.2 | GO:0009739 | response to gibberellin(GO:0009739) |
| 0.0 | 1.8 | GO:0072665 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.3 | 1.7 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 1.7 | GO:0031647 | regulation of protein stability(GO:0031647) |
| 0.0 | 1.7 | GO:0009664 | plant-type cell wall organization(GO:0009664) |
| 0.0 | 1.6 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 1.6 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.0 | 1.5 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.5 | 1.4 | GO:0006658 | phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.9 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 3.5 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 2.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 2.2 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 1.8 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 1.8 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 1.5 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.0 | 1.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 1.0 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.1 | 1.0 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.0 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.1 | 2.7 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.1 | 2.2 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.0 | 1.9 | GO:0003682 | chromatin binding(GO:0003682) |
| 0.4 | 1.7 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.0 | 1.7 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 1.7 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 1.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.5 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 1.4 | GO:0004512 | inositol-3-phosphate synthase activity(GO:0004512) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.3 | 0.8 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.8 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 0.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.1 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.0 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 1.1 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.1 | 0.7 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 0.5 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.2 | 0.5 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.5 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.5 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.1 | 0.4 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.1 | 0.4 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.3 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |