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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G54330
Z-value: 1.06
Transcription factors associated with AT1G54330
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G54330
|
AT1G54330 | NAC domain containing protein 20 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC020 | arTal_v1_Chr1_-_20280952_20280952 | -0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.49 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr5_+_1629610_1629610 Show fit | 1.41 |
AT5G05500.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr4_+_13128394_13128394 Show fit | 1.40 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.39 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 1.36 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.35 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 1.20 |
AT2G40170.1
|
Stress induced protein |
|
| arTal_v1_Chr3_-_17008528_17008528 Show fit | 1.18 |
AT3G46280.1
|
kinase-like protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.16 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr1_+_3288087_3288087 Show fit | 1.15 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
branched-chain amino acid transaminase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G54330
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.4 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.6 | 3.5 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.0 | 3.5 | GO:0009860 | pollen tube growth(GO:0009860) |
| 0.1 | 3.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 2.8 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.1 | 2.5 | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process(GO:0032436) positive regulation of proteasomal protein catabolic process(GO:1901800) |
| 0.1 | 2.3 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 2.1 | GO:0085029 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.0 | 2.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.8 | GO:0010227 | floral organ abscission(GO:0010227) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.1 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 2.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.8 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 1.8 | GO:0044421 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.1 | 1.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 1.3 | GO:0016459 | myosin complex(GO:0016459) |
| 0.0 | 1.3 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.1 | GO:0030139 | endocytic vesicle(GO:0030139) |
| 0.0 | 1.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.7 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.7 | 3.5 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.0 | 3.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 2.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 2.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 2.4 | GO:0031624 | ubiquitin conjugating enzyme binding(GO:0031624) |
| 0.1 | 2.3 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 2.3 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.3 | 2.2 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.3 | 2.2 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.6 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.5 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.4 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.1 | 0.2 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.0 | 0.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.1 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |