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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G54060

Z-value: 0.24

Transcription factors associated with AT1G54060

Gene Symbol Gene ID Gene Info
AT1G54060
AT1G54060 6B-interacting protein 1-like 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ASIL1arTal_v1_Chr1_+_20180610_201806100.166.0e-01Click!

Activity profile of AT1G54060 motif

Sorted Z-values of AT1G54060 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_16310768 0.29 AT4G34050.1
AT4G34050.2
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_16310409 0.28 AT4G34050.3
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_10316886 0.24 AT4G18780.1
IRX1
cellulose synthase family protein
Chr2_-_15589369 0.22 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr5_+_5084524 0.19 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr2_-_12996012 0.16 AT2G30490.1
C4H
cinnamate-4-hydroxylase
Chr1_-_9531489 0.13 AT1G27440.1
GUT2
Exostosin family protein
Chr3_+_6744377 0.09 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr5_-_19838235 0.01 AT5G48930.1
HCT
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G54060

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.2 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.3 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.2 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 0.3 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)