ISMARA results: AT1G53910

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G53910

Z-value: 1.17

Transcription factors associated with AT1G53910

Gene Symbol	Gene ID	Gene Info
AT1G53910 TAIR	AT1G53910	related to AP2 12

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
RAP2.12	arTal_v1_Chr1_+_20135100_20135112	0.19	5.2e-01	Click!

Activity profile of AT1G53910 motif

Sorted Z-values of AT1G53910 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr1_+_4662698_4662752 Show fit	1.20	AT1G13609.1 AT1G13609.2	AT1G13609 TAIR Show fit	Defensin-like (DEFL) family protein
arTal_v1_Chr3_-_21085245_21085245 Show fit	1.16	AT3G56970.1	bHLH38 TAIR Show fit	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr3_-_5625519_5625519 Show fit	0.97	AT3G16530.1	AT3G16530 TAIR Show fit	Legume lectin family protein
arTal_v1_Chr5_+_26266180_26266266 Show fit	0.92	AT5G65690.1 AT5G65690.2 AT5G65690.3 AT5G65690.4	PCK2 TAIR Show fit	phosphoenolpyruvate carboxykinase 2
arTal_v1_Chr5_+_23187840_23187840 Show fit	0.88	AT5G57220.1	CYP81F2 TAIR Show fit	cytochrome P450, family 81, subfamily F, polypeptide 2
arTal_v1_Chr4_+_9698940_9698940 Show fit	0.87	AT4G17340.1	TIP2%3B2 TAIR Show fit	tonoplast intrinsic protein 2;2
arTal_v1_Chr3_+_5187082_5187082 Show fit	0.84	AT3G15357.1	AT3G15357 TAIR Show fit	phosphopantothenoylcysteine decarboxylase subunit
arTal_v1_Chr5_+_15742543_15742543 Show fit	0.80	AT5G39320.1	UDG4 TAIR Show fit	UDP-glucose 6-dehydrogenase family protein
arTal_v1_Chr4_+_10703348_10703348 Show fit	0.79	AT4G19680.1 AT4G19680.2	IRT2 TAIR Show fit	iron regulated transporter 2
arTal_v1_Chr5_+_23003909_23003909 Show fit	0.76	AT5G56870.1	BGAL4 TAIR Show fit	beta-galactosidase 4

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G53910

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.8	GO:0045490	pectin catabolic process(GO:0045490)
0.0	3.5	GO:0043043	translation(GO:0006412) peptide biosynthetic process(GO:0043043)
0.3	3.2	GO:0009652	thigmotropism(GO:0009652)
0.2	2.5	GO:0042343	indole glucosinolate metabolic process(GO:0042343)
0.0	2.5	GO:0009698	phenylpropanoid metabolic process(GO:0009698)
0.1	2.0	GO:0016998	cell wall macromolecule catabolic process(GO:0016998)
0.0	1.9	GO:0034976	response to endoplasmic reticulum stress(GO:0034976)
0.2	1.7	GO:0010106	cellular response to iron ion starvation(GO:0010106)
0.0	1.5	GO:0090487	toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.2	1.4	GO:0009759	indole glucosinolate biosynthetic process(GO:0009759)

Showing 1 to 10 of 360 entries

Gene overrepresentation in cellular component category:

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Total log-likelihood	Term	Description
10.7	GO:0009506	cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
6.6	GO:0005618	cell wall(GO:0005618) external encapsulating structure(GO:0030312)
5.7	GO:0009505	plant-type cell wall(GO:0009505)
2.5	GO:0046658	anchored component of plasma membrane(GO:0046658)
1.4	GO:0015934	large ribosomal subunit(GO:0015934)
1.3	GO:0022627	cytosolic small ribosomal subunit(GO:0022627)
1.2	GO:0042025	host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
1.0	GO:0005680	anaphase-promoting complex(GO:0005680)
1.0	GO:0090575	RNA polymerase II transcription factor complex(GO:0090575)
0.9	GO:0044445	cytosolic part(GO:0044445)

Showing 1 to 10 of 109 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	6.3	GO:0003735	structural constituent of ribosome(GO:0003735)
0.1	4.0	GO:0046910	pectinesterase inhibitor activity(GO:0046910)
0.0	3.5	GO:0005507	copper ion binding(GO:0005507)
0.0	3.3	GO:0005509	calcium ion binding(GO:0005509)
0.0	2.0	GO:0004197	cysteine-type endopeptidase activity(GO:0004197)
0.0	1.7	GO:0004364	glutathione transferase activity(GO:0004364)
0.2	1.5	GO:0033946	xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.1	1.5	GO:0015248	sterol transporter activity(GO:0015248)
0.1	1.5	GO:0016864	protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.1	1.5	GO:0004568	chitinase activity(GO:0004568)

Showing 1 to 10 of 258 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.9	PID REG GR PATHWAY	Glucocorticoid receptor regulatory network
0.2	0.7	PID IFNG PATHWAY	IFN-gamma pathway
0.1	0.6	PID ATR PATHWAY	ATR signaling pathway
0.1	0.5	PID AP1 PATHWAY	AP-1 transcription factor network
0.1	0.3	PID FGF PATHWAY	FGF signaling pathway
0.1	0.2	PID TAP63 PATHWAY	Validated transcriptional targets of TAp63 isoforms
0.1	0.2	SA CASPASE CASCADE	Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.1	0.2	PID HNF3B PATHWAY	FOXA2 and FOXA3 transcription factor networks
0.1	0.2	ST WNT BETA CATENIN PATHWAY	Wnt/beta-catenin Pathway
0.0	0.2	PID P73PATHWAY	p73 transcription factor network

Showing 1 to 10 of 16 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.0	REACTOME GLUCONEOGENESIS	Genes involved in Gluconeogenesis
0.2	0.7	REACTOME NOD1 2 SIGNALING PATHWAY	Genes involved in NOD1/2 Signaling Pathway
0.0	0.7	REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION	Genes involved in Influenza Viral RNA Transcription and Replication
0.1	0.5	REACTOME FORMATION OF INCISION COMPLEX IN GG NER	Genes involved in Formation of incision complex in GG-NER
0.1	0.5	REACTOME UNWINDING OF DNA	Genes involved in Unwinding of DNA
0.1	0.4	REACTOME G0 AND EARLY G1	Genes involved in G0 and Early G1
0.0	0.4	REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES	Genes involved in Chemokine receptors bind chemokines
0.1	0.3	REACTOME FRS2 MEDIATED CASCADE	Genes involved in FRS2-mediated cascade
0.1	0.3	REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS	Genes involved in Synthesis of bile acids and bile salts
0.0	0.3	REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION	Genes involved in Antigen processing: Ubiquitination & Proteasome degradation

Showing 1 to 10 of 25 entries

Results for AT1G53910

Z-value: 1.17

Transcription factors associated with AT1G53910

Activity-expression correlation:

Activity profile of AT1G53910 motif

Sorted Z-values of AT1G53910 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G53910

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: