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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G53170
Z-value: 1.12
Transcription factors associated with AT1G53170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G53170
|
AT1G53170 | ethylene response factor 8 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF8 | arTal_v1_Chr1_-_19822399_19822399 | 0.46 | 9.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.83 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 2.26 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr3_+_20612693_20612693 Show fit | 2.20 |
AT3G55580.1
|
Regulator of chromosome condensation (RCC1) family protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 2.13 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 2.09 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 1.87 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_9028262_9028262 Show fit | 1.86 |
AT4G15910.1
|
drought-induced 21 |
|
| arTal_v1_Chr2_-_12343443_12343443 Show fit | 1.75 |
AT2G28780.1
|
P-hydroxybenzoic acid efflux pump subunit |
|
| arTal_v1_Chr1_-_17266724_17266824 Show fit | 1.71 |
AT1G46768.3
AT1G46768.2 AT1G46768.1 |
related to AP2 1 |
|
| arTal_v1_Chr1_+_28498821_28498821 Show fit | 1.61 |
AT1G75900.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G53170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.9 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 4.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 3.8 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.6 | 3.5 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 3.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.0 | 3.1 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.2 | 2.8 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.2 | 2.8 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 2.7 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
| 0.3 | 2.6 | GO:0097577 | intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 6.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 4.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 4.4 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 2.6 | GO:0044215 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.4 | 2.5 | GO:0000311 | plastid large ribosomal subunit(GO:0000311) |
| 0.0 | 2.2 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.0 | 2.1 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 1.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 5.2 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 4.4 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.0 | 4.0 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 3.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 3.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.8 | 3.2 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.5 | 2.5 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
| 0.3 | 2.4 | GO:0001872 | (1->3)-beta-D-glucan binding(GO:0001872) |
| 0.2 | 2.4 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.4 | 0.4 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.4 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 0.1 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.4 | 1.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 0.9 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.9 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.8 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.1 | 0.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.5 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.2 | 0.5 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.1 | 0.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |