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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G52880
Z-value: 1.16
Transcription factors associated with AT1G52880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G52880
|
AT1G52880 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAM | arTal_v1_Chr1_-_19690589_19690589 | 0.31 | 2.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_1704838_1704838 Show fit | 1.38 |
AT1G05680.1
|
Uridine diphosphate glycosyltransferase 74E2 |
|
| arTal_v1_Chr5_+_6566271_6566303 Show fit | 1.34 |
AT5G19470.1
AT5G19470.2 |
nudix hydrolase homolog 24 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.25 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr4_-_8854706_8854706 Show fit | 1.19 |
AT4G15490.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr5_-_19542760_19542760 Show fit | 1.14 |
AT5G48180.1
|
nitrile specifier protein 5 |
|
| arTal_v1_Chr4_+_16944878_16944941 Show fit | 1.08 |
AT4G35770.1
AT4G35770.2 AT4G35770.5 AT4G35770.6 AT4G35770.4 AT4G35770.3 |
Rhodanese/Cell cycle control phosphatase superfamily protein |
|
| arTal_v1_Chr1_-_26796529_26796532 Show fit | 1.03 |
AT1G71030.1
AT1G71030.2 |
MYB-like 2 |
|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 1.02 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_15425129_15425129 Show fit | 1.01 |
AT2G36800.1
|
don-glucosyltransferase 1 |
|
| arTal_v1_Chr3_+_9827682_9827682 Show fit | 1.00 |
AT3G26740.1
|
CCR-like protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G52880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0009657 | plastid organization(GO:0009657) |
| 0.2 | 2.3 | GO:0050898 | nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028) |
| 0.0 | 1.8 | GO:0046283 | anthocyanin-containing compound metabolic process(GO:0046283) |
| 0.0 | 1.6 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.3 | 1.4 | GO:0080024 | indolebutyric acid metabolic process(GO:0080024) |
| 0.1 | 1.4 | GO:0006560 | proline metabolic process(GO:0006560) |
| 0.2 | 1.3 | GO:0046482 | para-aminobenzoic acid metabolic process(GO:0046482) |
| 0.2 | 1.3 | GO:0031936 | negative regulation of chromatin silencing(GO:0031936) |
| 0.1 | 1.3 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 1.3 | GO:0016123 | xanthophyll biosynthetic process(GO:0016123) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 1.9 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.0 | 1.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.2 | 1.2 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.0 | 1.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.1 | 1.0 | GO:0000786 | nucleosome(GO:0000786) |
| 0.1 | 0.8 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.1 | 0.7 | GO:0045240 | dihydrolipoyl dehydrogenase complex(GO:0045240) |
| 0.0 | 0.7 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.1 | 0.6 | GO:0017119 | Golgi transport complex(GO:0017119) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 2.9 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.0 | 2.4 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.3 | 1.9 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.1 | 1.9 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
| 0.0 | 1.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.4 | 1.5 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
| 0.1 | 1.5 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
| 0.5 | 1.4 | GO:0050736 | O-malonyltransferase activity(GO:0050736) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.1 | PID BCR 5PATHWAY | BCR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 1.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.1 | 0.7 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.5 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.3 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.3 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.0 | 0.3 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.2 | 0.2 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |