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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G52150
Z-value: 0.98
Transcription factors associated with AT1G52150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G52150
|
AT1G52150 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ATHB-15 | arTal_v1_Chr1_-_19414678_19414764 | -0.79 | 7.6e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 1.24 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 1.19 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr1_-_23137254_23137254 Show fit | 1.12 |
AT1G62510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.02 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 1.01 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.01 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 0.97 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr3_-_12451556_12451556 Show fit | 0.97 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 0.95 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr4_+_10838310_10838310 Show fit | 0.95 |
AT4G20000.1
|
VQ motif-containing protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G52150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 3.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 3.3 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 2.2 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 2.2 | GO:0010224 | response to UV-B(GO:0010224) |
| 0.0 | 1.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 1.8 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 1.5 | GO:0006814 | sodium ion transport(GO:0006814) |
| 0.1 | 1.3 | GO:0010262 | somatic embryogenesis(GO:0010262) |
| 0.1 | 1.3 | GO:0010093 | specification of floral organ identity(GO:0010093) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 1.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 1.0 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.9 | GO:0032300 | mismatch repair complex(GO:0032300) |
| 0.1 | 0.8 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.2 | 0.7 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.2 | 0.7 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.7 | GO:0090397 | stigma papilla(GO:0090397) |
| 0.1 | 0.7 | GO:0071818 | BAT3 complex(GO:0071818) |
| 0.1 | 0.5 | GO:0070505 | pollen coat(GO:0070505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 3.3 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.0 | 2.8 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.6 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.2 | 2.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 1.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 1.6 | GO:0010333 | terpene synthase activity(GO:0010333) |
| 0.2 | 1.4 | GO:0052634 | gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634) |
| 0.0 | 1.4 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 1.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.4 | 1.3 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.0 | 0.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.2 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.4 | REACTOME MEIOSIS | Genes involved in Meiosis |
| 0.1 | 0.3 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.3 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |