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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G51700
Z-value: 0.56
Transcription factors associated with AT1G51700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G51700
|
AT1G51700 | DOF zinc finger protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| DOF1 | arTal_v1_Chr1_+_19173880_19173880 | 0.66 | 1.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_7828724_7828724 Show fit | 0.59 |
AT5G23240.1
|
DNAJ heat shock N-terminal domain-containing protein |
|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 0.56 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 0.56 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 0.52 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 0.48 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr4_-_12745352_12745352 Show fit | 0.46 |
AT4G24700.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_20310850_20310850 Show fit | 0.43 |
AT1G54410.1
|
dehydrin family protein |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 0.43 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_5237970_5238178 Show fit | 0.41 |
AT5G16030.1
AT5G16030.4 AT5G16030.2 AT5G16030.3 |
mental retardation GTPase activating protein |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 0.40 |
AT2G15020.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G51700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.0 | 1.9 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.0 | 1.8 | GO:0006338 | chromatin remodeling(GO:0006338) |
| 0.0 | 1.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.2 | 1.0 | GO:0010201 | response to continuous far red light stimulus by the high-irradiance response system(GO:0010201) |
| 0.0 | 1.0 | GO:0016036 | cellular response to phosphate starvation(GO:0016036) |
| 0.1 | 0.9 | GO:0010190 | cytochrome b6f complex assembly(GO:0010190) |
| 0.0 | 0.9 | GO:0006333 | chromatin assembly or disassembly(GO:0006333) |
| 0.1 | 0.8 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 0.8 | GO:2000896 | amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 1.4 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.0 | 1.3 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.0 | 1.2 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 1.1 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.1 | GO:0043657 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 1.0 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
| 0.0 | 0.9 | GO:0005871 | kinesin complex(GO:0005871) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 2.2 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 1.6 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.0 | 1.5 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 1.3 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 1.2 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 1.1 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.0 | 1.1 | GO:0042393 | histone binding(GO:0042393) |
| 0.1 | 0.9 | GO:0034647 | histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647) |
| 0.2 | 0.8 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.1 | 0.2 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.1 | 0.2 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.1 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
| 0.0 | 0.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.1 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.0 | 0.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.1 | 0.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.4 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 0.3 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.0 | 0.3 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |
| 0.0 | 0.3 | REACTOME TRANSMEMBRANE TRANSPORT OF SMALL MOLECULES | Genes involved in Transmembrane transport of small molecules |
| 0.1 | 0.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.2 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
| 0.1 | 0.2 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |