GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G51220
|
AT1G51220 | WIP domain protein 5 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
WIP5 | arTal_v1_Chr1_-_18992149_18992149 | -0.39 | 1.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_21240717_21240717 Show fit | 4.57 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
arTal_v1_Chr5_-_17199793_17199910 Show fit | 3.46 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
arTal_v1_Chr2_-_19370478_19370478 Show fit | 3.35 |
AT2G47180.1
|
galactinol synthase 1 |
|
arTal_v1_Chr2_-_6493512_6493512 Show fit | 3.33 |
AT2G15020.1
|
hypothetical protein |
|
arTal_v1_Chr1_-_22280593_22280593 Show fit | 3.08 |
AT1G60470.1
|
galactinol synthase 4 |
|
arTal_v1_Chr4_+_8827600_8827710 Show fit | 2.83 |
AT4G15430.2
AT4G15430.1 |
ERD (early-responsive to dehydration stress) family protein |
|
arTal_v1_Chr3_+_10547441_10547441 Show fit | 2.82 |
AT3G28290.1
|
transmembrane protein, putative (DUF677) |
|
arTal_v1_Chr1_-_1248826_1248876 Show fit | 2.72 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
|
arTal_v1_Chr5_-_6725966_6725966 Show fit | 2.55 |
AT5G19890.1
|
Peroxidase superfamily protein |
|
arTal_v1_Chr2_+_2015624_2015706 Show fit | 2.55 |
AT2G05510.1
AT2G05510.3 AT2G05510.4 AT2G05510.2 AT2G05510.6 AT2G05510.5 |
Glycine-rich protein family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 7.8 | GO:0072708 | response to sorbitol(GO:0072708) |
0.2 | 7.0 | GO:0006012 | galactose metabolic process(GO:0006012) |
0.1 | 6.5 | GO:0055067 | monovalent inorganic cation homeostasis(GO:0055067) |
0.5 | 6.0 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
0.4 | 5.3 | GO:0010555 | response to mannitol(GO:0010555) |
0.2 | 5.2 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
0.1 | 4.9 | GO:0016579 | protein deubiquitination(GO:0016579) |
0.8 | 4.5 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
0.2 | 4.4 | GO:0010268 | brassinosteroid homeostasis(GO:0010268) |
0.2 | 4.3 | GO:0031425 | chloroplast RNA processing(GO:0031425) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 61.1 | GO:0005829 | cytosol(GO:0005829) |
0.0 | 24.5 | GO:0030054 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
0.0 | 10.7 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 8.6 | GO:0000325 | plant-type vacuole(GO:0000325) |
0.1 | 7.1 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.1 | 6.2 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
0.0 | 5.5 | GO:0009941 | chloroplast envelope(GO:0009941) |
0.1 | 4.6 | GO:0005770 | late endosome(GO:0005770) |
0.0 | 4.4 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.0 | 3.7 | GO:0005774 | vacuolar membrane(GO:0005774) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.7 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 13.4 | GO:0008270 | zinc ion binding(GO:0008270) |
0.1 | 11.6 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
0.2 | 7.0 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
0.4 | 6.8 | GO:0016157 | sucrose synthase activity(GO:0016157) |
0.0 | 6.8 | GO:0003924 | GTPase activity(GO:0003924) |
0.7 | 6.4 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
0.0 | 5.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.3 | 5.8 | GO:0008559 | xenobiotic-transporting ATPase activity(GO:0008559) |
0.1 | 5.2 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.3 | PID RAS PATHWAY | Regulation of Ras family activation |
0.3 | 1.3 | PID S1P S1P1 PATHWAY | S1P1 pathway |
0.3 | 1.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.4 | 1.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 0.5 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.3 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 0.2 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 3.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.2 | 2.0 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.3 | 1.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
0.2 | 1.7 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
0.0 | 1.5 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.5 | 1.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.4 | 1.1 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
0.3 | 1.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
0.2 | 1.0 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 1.0 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |