Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT1G49480
Z-value: 1.64
Transcription factors associated with AT1G49480
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G49480
|
AT1G49480 | related to vernalization1 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RTV1 | arTal_v1_Chr1_-_18315650_18315650 | -0.07 | 8.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 3.05 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 2.83 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.67 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 2.44 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 2.43 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 2.40 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.39 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 2.31 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.07 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 2.06 |
AT1G74670.1
|
Gibberellin-regulated family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G49480
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 16.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 10.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 9.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.3 | 6.6 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 1.6 | 6.2 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 5.4 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 4.4 | GO:0009750 | response to fructose(GO:0009750) |
| 1.0 | 4.0 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.2 | 3.8 | GO:0006032 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.2 | 3.7 | GO:0031407 | oxylipin metabolic process(GO:0031407) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 49.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 8.6 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 6.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.2 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 4.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 3.8 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 2.5 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.2 | 2.3 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 2.0 | GO:0000786 | nucleosome(GO:0000786) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.8 | 6.1 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.0 | 5.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.5 | 5.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.1 | 4.8 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 4.7 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.0 | 4.7 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.2 | 4.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 4.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.3 | 3.6 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.5 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.2 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 1.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 0.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.6 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 0.9 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.6 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.0 | 0.6 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.3 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.1 | 0.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |