Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT1G47870

Z-value: 0.39

Transcription factors associated with AT1G47870

Gene Symbol Gene ID Gene Info
AT1G47870
AT1G47870 winged-helix DNA-binding transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ATE2F2arTal_v1_Chr1_+_17634697_176347570.293.1e-01Click!

Activity profile of AT1G47870 motif

Sorted Z-values of AT1G47870 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_13283526 0.53 AT4G26220.1
AT4G26220
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_16310768 0.43 AT4G34050.1
AT4G34050.2
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_-_5741500 0.42 AT5G17420.1
IRX3
Cellulose synthase family protein
Chr4_+_16310409 0.42 AT4G34050.3
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_24167996 0.41 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
Chr2_+_15934244 0.36 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
Chr2_-_15589369 0.33 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr4_-_16063070 0.30 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
Chr5_+_24168245 0.27 AT5G60020.3
LAC17
laccase 17
Chr2_-_12996012 0.26 AT2G30490.1
C4H
cinnamate-4-hydroxylase
Chr5_+_5084524 0.25 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Chr5_+_17714390 0.21 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
Chr3_-_8217080 0.13 AT3G23090.1
AT3G23090.2
AT3G23090.4
AT3G23090.3
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
Chr3_+_6744377 0.12 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr5_+_17715687 0.10 AT5G44030.3
CESA4
cellulose synthase A4
Chr4_+_14034536 0.10 AT4G28370.3
AT4G28370.2
AT4G28370.1
AT4G28370.4
AT4G28370
RING/U-box superfamily protein
Chr5_-_24422274 0.08 AT5G60720.1
AT5G60720
electron transporter, putative (Protein of unknown function, DUF547)
Chr3_-_8216305 0.06 AT3G23090.5
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
Chr5_+_25050679 0.04 AT5G62380.2
NAC101
NAC-domain protein 101
Chr1_+_6177481 0.04 AT1G17950.1
MYB52
myb domain protein 52
Chr5_+_25050152 0.03 AT5G62380.1
NAC101
NAC-domain protein 101

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G47870

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.4 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.5 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.1 GO:0090058 metaxylem development(GO:0090058)
0.0 0.3 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 1.1 GO:0009808 lignin metabolic process(GO:0009808)
0.0 0.3 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0010330 cellulose synthase complex(GO:0010330)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 0.3 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 0.3 GO:0047517 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.0 1.0 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.7 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)