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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G47655
Z-value: 0.70
Transcription factors associated with AT1G47655
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G47655
|
AT1G47655 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G47655 | arTal_v1_Chr1_+_17525342_17525342 | 0.10 | 7.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_3420932_3420932 Show fit | 1.12 |
AT3G10930.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 0.99 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr5_-_216773_216773 Show fit | 0.94 |
AT5G01550.1
|
lectin receptor kinase a4.1 |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 0.90 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr3_+_18465318_18465318 Show fit | 0.75 |
AT3G49780.1
|
phytosulfokine 4 precursor |
|
| arTal_v1_Chr5_+_18905258_18905272 Show fit | 0.71 |
AT5G46590.1
AT5G46590.2 |
NAC domain containing protein 96 |
|
| arTal_v1_Chr2_-_16359943_16359943 Show fit | 0.70 |
AT2G39200.1
|
Seven transmembrane MLO family protein |
|
| arTal_v1_Chr5_-_18371021_18371021 Show fit | 0.69 |
AT5G45340.2
AT5G45340.1 |
cytochrome P450, family 707, subfamily A, polypeptide 3 |
|
| arTal_v1_Chr1_-_1702749_1702749 Show fit | 0.68 |
AT1G05675.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr5_-_8186662_8186704 Show fit | 0.68 |
AT5G24160.2
AT5G24160.1 |
squalene monooxygenase 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G47655
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 1.4 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.2 | 1.0 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.0 | 1.0 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
| 0.0 | 1.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 0.9 | GO:0031540 | regulation of anthocyanin biosynthetic process(GO:0031540) |
| 0.0 | 0.8 | GO:0008037 | cell recognition(GO:0008037) recognition of pollen(GO:0048544) |
| 0.1 | 0.7 | GO:0043290 | sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345) |
| 0.0 | 0.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 0.6 | GO:0010623 | programmed cell death involved in cell development(GO:0010623) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 0.8 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.3 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
| 0.0 | 0.3 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.0 | 0.3 | GO:1902495 | transmembrane transporter complex(GO:1902495) |
| 0.0 | 0.2 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.1 | GO:0008622 | epsilon DNA polymerase complex(GO:0008622) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.7 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 1.2 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.1 | 0.9 | GO:0004806 | triglyceride lipase activity(GO:0004806) |
| 0.0 | 0.8 | GO:0042973 | glucan endo-1,3-beta-D-glucosidase activity(GO:0042973) |
| 0.1 | 0.7 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
| 0.1 | 0.7 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.0 | 0.7 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 0.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 0.6 | GO:0016768 | spermine synthase activity(GO:0016768) |
| 0.0 | 0.6 | GO:0005375 | copper ion transmembrane transporter activity(GO:0005375) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.0 | 0.1 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.0 | 0.1 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.0 | 0.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |