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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G46768
Z-value: 0.59
Transcription factors associated with AT1G46768
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G46768
|
AT1G46768 | related to AP2 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.1 | arTal_v1_Chr1_-_17266724_17266824 | 0.50 | 7.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.32 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.21 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.19 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_+_22388782_22388782 Show fit | 0.78 |
AT5G55180.2
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr5_+_22388521_22388521 Show fit | 0.76 |
AT5G55180.1
|
O-Glycosyl hydrolases family 17 protein |
|
| arTal_v1_Chr5_-_7054281_7054281 Show fit | 0.74 |
AT5G20830.3
|
sucrose synthase 1 |
|
| arTal_v1_Chr5_-_7054713_7054713 Show fit | 0.72 |
AT5G20830.1
|
sucrose synthase 1 |
|
| arTal_v1_Chr5_-_7055398_7055398 Show fit | 0.70 |
AT5G20830.2
|
sucrose synthase 1 |
|
| arTal_v1_Chr4_-_6479165_6479171 Show fit | 0.65 |
AT4G10480.2
AT4G10480.1 |
Nascent polypeptide-associated complex (NAC), alpha subunit family protein |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 0.64 |
AT1G20440.1
|
cold-regulated 47 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G46768
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.2 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.4 | 2.2 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 1.6 | GO:1902074 | response to salt(GO:1902074) |
| 0.1 | 1.1 | GO:0010044 | response to aluminum ion(GO:0010044) |
| 0.0 | 1.0 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
| 0.1 | 0.8 | GO:0009942 | longitudinal axis specification(GO:0009942) |
| 0.1 | 0.8 | GO:0070370 | cellular heat acclimation(GO:0070370) |
| 0.0 | 0.8 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.0 | 0.8 | GO:0000470 | maturation of LSU-rRNA(GO:0000470) |
| 0.1 | 0.7 | GO:0097502 | mannosylation(GO:0097502) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.1 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.2 | GO:0005795 | Golgi stack(GO:0005795) |
| 0.1 | 0.9 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.1 | 0.7 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
| 0.0 | 0.7 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.1 | 0.6 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 0.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.2 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 2.2 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.0 | 1.6 | GO:0051753 | beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753) |
| 0.0 | 1.1 | GO:0008143 | poly(A) binding(GO:0008143) |
| 0.1 | 0.9 | GO:0016018 | cyclosporin A binding(GO:0016018) |
| 0.0 | 0.8 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 0.7 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 0.7 | GO:0031072 | heat shock protein binding(GO:0031072) |
| 0.0 | 0.7 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.2 | 0.6 | GO:0036009 | protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 0.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.5 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.3 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.1 | 0.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 0.2 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.1 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |