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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G45249
Z-value: 1.78
Transcription factors associated with AT1G45249
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G45249
|
AT1G45249 | abscisic acid responsive elements-binding factor 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ABF2 | arTal_v1_Chr1_-_17167741_17167924 | 0.49 | 7.5e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 6.53 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 5.32 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 5.02 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 4.99 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 4.98 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 4.94 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 4.54 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_+_5211719_5211719 Show fit | 4.17 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
|
| arTal_v1_Chr2_+_19245591_19245684 Show fit | 3.95 |
AT2G46830.1
AT2G46830.2 |
circadian clock associated 1 |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 3.83 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G45249
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 28.2 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.3 | 9.1 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 8.7 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.1 | 8.1 | GO:0009631 | cold acclimation(GO:0009631) |
| 1.3 | 7.6 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 1.3 | 6.5 | GO:0031000 | response to caffeine(GO:0031000) response to alkaloid(GO:0043279) |
| 0.1 | 5.0 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 0.3 | 4.8 | GO:0018230 | peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231) |
| 0.2 | 4.6 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 1.5 | 4.5 | GO:0010266 | response to vitamin B1(GO:0010266) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 37.8 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 30.4 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 10.9 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 10.1 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.1 | 8.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 5.8 | GO:0009527 | plastid outer membrane(GO:0009527) |
| 0.2 | 4.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.1 | 4.2 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 3.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 3.1 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 9.7 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 1.3 | 7.6 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.8 | 6.5 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.2 | 6.5 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.4 | 5.5 | GO:0004430 | 1-phosphatidylinositol 4-kinase activity(GO:0004430) |
| 1.0 | 5.0 | GO:0015186 | L-glutamine transmembrane transporter activity(GO:0015186) |
| 0.1 | 4.9 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 4.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 4.8 | GO:0019706 | protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707) |
| 0.2 | 4.6 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.3 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.7 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.3 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.5 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
| 0.3 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.7 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.7 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |
| 0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |