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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G45249

Z-value: 1.78

Transcription factors associated with AT1G45249

Gene Symbol Gene ID Gene Info
AT1G45249
AT1G45249 abscisic acid responsive elements-binding factor 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ABF2arTal_v1_Chr1_-_17167741_171679240.497.5e-02Click!

Activity profile of AT1G45249 motif

Sorted Z-values of AT1G45249 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_+_28975255 6.53 AT1G77120.1
ADH1
alcohol dehydrogenase 1
Chr1_+_3019639 5.32 AT1G09350.1
GolS3
galactinol synthase 3
Chr5_+_5206156 5.02 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr5_-_17199793 4.99 AT5G42900.1
AT5G42900.3
AT5G42900.2
COR27
cold regulated protein 27
Chr5_+_5205869 4.98 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr1_+_3020221 4.94 AT1G09350.2
GolS3
galactinol synthase 3
Chr5_-_14753088 4.54 AT5G37260.1
RVE2
Homeodomain-like superfamily protein
Chr5_+_5211719 4.17 AT5G15970.1
KIN2
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)
Chr2_+_19245591 3.95 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
Chr5_-_5692920 3.83 AT5G17300.2
AT5G17300.1
RVE1
Homeodomain-like superfamily protein
Chr2_+_19246681 3.68 AT2G46830.3
CCA1
circadian clock associated 1
Chr5_+_17987591 3.32 AT5G44590.2
AT5G44590.1
AT5G44590
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_22935510 3.28 AT3G61930.1
AT3G61930
hypothetical protein
Chr1_+_6763765 3.21 AT1G19530.1
AT1G19530.2
AT1G19530
DNA polymerase epsilon catalytic subunit A
Chr2_-_12343443 3.18 AT2G28780.1
AT2G28780
P-hydroxybenzoic acid efflux pump subunit
Chr3_-_20576249 3.09 AT3G55500.1
EXPA16
expansin A16
Chr5_-_5177897 3.07 AT5G15850.1
COL1
CONSTANS-like 1
Chr5_+_15878698 3.06 AT5G39660.1
AT5G39660.3
AT5G39660.2
CDF2
cycling DOF factor 2
Chr1_-_26163715 2.93 AT1G69570.1
AT1G69570
Dof-type zinc finger DNA-binding family protein
Chr1_-_10475969 2.84 AT1G29920.1
CAB2
chlorophyll A/B-binding protein 2
Chr2_-_17202848 2.70 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_+_17526660 2.69 AT5G43630.2
AT5G43630.1
AT5G43630.3
AT5G43630.4
TZP
zinc knuckle (CCHC-type) family protein
Chr3_+_7959753 2.64 AT3G22440.1
AT3G22440
FRIGIDA-like protein
Chr5_-_22115539 2.59 AT5G54470.1
BBX29
B-box type zinc finger family protein
Chr2_+_19232607 2.57 AT2G46790.3
AT2G46790.4
AT2G46790.1
AT2G46790.2
AT2G46790.5
PRR9
pseudo-response regulator 9
Chr2_-_18082776 2.48 AT2G43590.1
AT2G43590
Chitinase family protein
Chr2_+_10244745 2.43 AT2G24100.1
ASG1
ATP-dependent DNA helicase
Chr1_+_17766738 2.42 AT1G48100.1
AT1G48100
Pectin lyase-like superfamily protein
Chr2_+_12666935 2.37 AT2G29630.3
AT2G29630.2
AT2G29630.1
THIC
thiaminC
Chr2_+_17057388 2.32 AT2G40880.1
CYSA
cystatin A
Chr3_+_22635803 2.31 AT3G61160.3
AT3G61160.6
AT3G61160.5
AT3G61160.4
AT3G61160.2
AT3G61160.1
AT3G61160
Protein kinase superfamily protein
Chr1_+_25016402 2.26 AT1G67030.1
ZFP6
zinc finger protein 6
Chr1_+_29759030 2.24 AT1G79110.2
AT1G79110.3
AT1G79110.1
BRG2
zinc ion binding protein
Chr1_-_598657 2.23 AT1G02730.1
CSLD5
cellulose synthase-like D5
Chr1_-_40945 2.21 AT1G01070.2
AT1G01070.1
UMAMIT28
nodulin MtN21 /EamA-like transporter family protein
Chr2_+_12667901 2.16 AT2G29630.4
THIC
thiaminC
Chr2_+_6950041 2.16 AT2G15970.2
COR413-PM1
cold regulated 413 plasma membrane 1
Chr5_-_23117403 2.16 AT5G57110.3
AT5G57110.1
AT5G57110.2
ACA8
autoinhibited Ca2+ -ATPase, isoform 8
Chr5_-_10070899 2.16 AT5G28060.1
AT5G28060
Ribosomal protein S24e family protein
Chr2_+_6949851 2.15 AT2G15970.1
COR413-PM1
cold regulated 413 plasma membrane 1
Chr3_-_3238267 2.13 AT3G10410.1
SCPL49
SERINE CARBOXYPEPTIDASE-LIKE 49
Chr2_-_17065813 2.12 AT2G40900.1
UMAMIT11
nodulin MtN21 /EamA-like transporter family protein
Chr5_+_2563366 2.12 AT5G08000.1
AT5G08000.2
E13L3
glucan endo-1,3-beta-glucosidase-like protein 3
Chr4_+_10861382 2.12 AT4G20070.1
AT4G20070.2
AAH
allantoate amidohydrolase
Chr1_-_7089606 2.09 AT1G20450.1
AT1G20450.2
ERD10
Dehydrin family protein
Chr5_+_22515391 2.05 AT5G55580.1
AT5G55580.3
AT5G55580.2
AT5G55580
Mitochondrial transcription termination factor family protein
Chr5_+_22388782 2.04 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr5_-_17022723 2.02 AT5G42570.1
AT5G42570
B-cell receptor-associated 31-like protein
Chr5_+_22388521 1.98 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr3_+_5243432 1.97 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr1_+_25701770 1.93 AT1G68500.1
AT1G68500
hypothetical protein
Chr1_-_4679594 1.93 AT1G13640.2
AT1G13640
Phosphatidylinositol 3- and 4-kinase family protein
Chr2_-_9056481 1.90 AT2G21130.1
AT2G21130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr5_+_332330 1.88 AT5G01850.2
AT5G01850.1
AT5G01850
Protein kinase superfamily protein
Chr1_-_16851010 1.85 AT1G44446.4
CH1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr1_-_16851224 1.85 AT1G44446.3
AT1G44446.2
AT1G44446.1
CH1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr1_-_4679862 1.85 AT1G13640.1
AT1G13640
Phosphatidylinositol 3- and 4-kinase family protein
Chr1_+_26122080 1.83 AT1G69490.1
NAP
NAC-like, activated by AP3/PI
Chr4_-_9779939 1.81 AT4G17550.1
G3Pp4
Major facilitator superfamily protein
Chr1_-_29034822 1.81 AT1G77280.2
AT1G77280.1
AT1G77280
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr5_+_579744 1.77 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr5_-_17755742 1.76 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_18305445 1.73 AT1G49450.1
AT1G49450
Transducin/WD40 repeat-like superfamily protein
Chr3_+_22757761 1.73 AT3G61490.1
AT3G61490.4
AT3G61490.2
AT3G61490
Pectin lyase-like superfamily protein
Chr3_-_1624819 1.70 AT3G05600.2
AT3G05600.1
AT3G05600
alpha/beta-Hydrolases superfamily protein
Chr5_+_25948954 1.70 AT5G64940.1
AT5G64940.2
ATH13
ABC2 homolog 13
Chr1_+_17847042 1.69 AT1G48300.1
DGAT3
diacylglycerol acyltransferase
Chr2_-_15797059 1.69 AT2G37660.1
AT2G37660
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_20651443 1.67 AT3G55660.2
AT3G55660.1
ROPGEF6
ROP (rho of plants) guanine nucleotide exchange factor 6
Chr3_-_17976774 1.65 AT3G48520.1
CYP94B3
cytochrome P450, family 94, subfamily B, polypeptide 3
Chr5_+_16410782 1.65 AT5G40950.1
RPL27
ribosomal protein large subunit 27
Chr1_+_18342451 1.65 AT1G49560.1
AT1G49560.2
AT1G49560
Homeodomain-like superfamily protein
Chr1_-_29716255 1.64 AT1G78995.1
AT1G78995
hypothetical protein
Chr5_-_23501416 1.63 AT5G58070.1
TIL
temperature-induced lipocalin
Chr1_+_13225168 1.60 AT1G35720.1
ANNAT1
annexin 1
Chr1_-_6754073 1.59 AT1G19490.1
AT1G19490
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_+_12706627 1.58 AT2G29740.1
UGT71C2
UDP-glucosyl transferase 71C2
Chr2_-_16757599 1.57 AT2G40120.1
AT2G40120
Protein kinase superfamily protein
Chr5_-_1063425 1.56 AT5G03940.1
CPSRP54
chloroplast signal recognition particle 54 kDa subunit
Chr1_+_23515680 1.54 AT1G63420.1
AT1G63420.2
AT1G63420
O-glucosyltransferase-like protein (DUF821)
Chr3_+_22758039 1.53 AT3G61490.5
AT3G61490.3
AT3G61490
Pectin lyase-like superfamily protein
Chr4_-_7553332 1.51 AT4G12910.2
AT4G12910.1
scpl20
serine carboxypeptidase-like 20
Chr5_+_2202364 1.50 AT5G07090.1
AT5G07090.3
AT5G07090.2
AT5G07090
Ribosomal protein S4 (RPS4A) family protein
Chr2_+_417427 1.50 AT2G01910.2
ATMAP65-6
Microtubule associated protein (MAP65/ASE1) family protein
Chr1_+_18346958 1.49 AT1G49570.1
AT1G49570
Peroxidase superfamily protein
Chr5_-_18021508 1.49 AT5G44670.1
GALS2
glycosyltransferase family protein (DUF23)
Chr1_+_9214072 1.48 AT1G26665.1
AT1G26665.2
AT1G26665
Mediator complex, subunit Med10
Chr5_-_4392429 1.47 AT5G13630.1
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr5_-_4392227 1.47 AT5G13630.2
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr1_-_20812915 1.47 AT1G55690.1
AT1G55690.3
AT1G55690.4
AT1G55690.5
AT1G55690.2
AT1G55690
Sec14p-like phosphatidylinositol transfer family protein
Chr3_-_7608444 1.46 AT3G21600.3
AT3G21600.2
AT3G21600.1
AT3G21600
Senescence/dehydration-associated protein-like protein
Chr1_+_25508639 1.46 AT1G68050.1
FKF1
flavin-binding, kelch repeat, f box 1
Chr2_+_10379948 1.46 AT2G24420.1
AT2G24420.2
AT2G24420
DNA repair ATPase-like protein
Chr4_-_13016235 1.45 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
Chr1_+_20273567 1.45 AT1G54310.2
AT1G54310.1
AT1G54310
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_16881336 1.44 AT4G35560.1
AT4G35560.2
DAW1
Transducin/WD40 repeat-like superfamily protein
Chr2_-_15783480 1.44 AT2G37630.1
AS1
myb-like HTH transcriptional regulator family protein
Chr3_+_19890364 1.44 AT3G53670.2
AT3G53670.1
AT3G53670
hypothetical protein
Chr4_-_10291058 1.43 AT4G18700.1
CIPK12
CBL-interacting protein kinase 12
Chr4_+_596397 1.43 AT4G01440.3
AT4G01440.2
AT4G01440.1
AT4G01440.4
UMAMIT31
nodulin MtN21 /EamA-like transporter family protein
Chr2_+_15005064 1.43 AT2G35700.1
ERF38
ERF family protein 38
Chr2_+_18834011 1.43 AT2G45720.3
AT2G45720.2
AT2G45720.4
AT2G45720.5
AT2G45720
ARM repeat superfamily protein
Chr4_+_285876 1.43 AT4G00700.2
AT4G00700.1
AT4G00700
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Chr5_-_3709403 1.43 AT5G11550.1
AT5G11550
ARM repeat superfamily protein
Chr1_+_6688463 1.43 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_7973995 1.42 AT5G23660.1
SWEET12
bidirectional sugar transporter SWEET12-like protein
Chr1_-_28117405 1.41 AT1G74840.2
AT1G74840.1
AT1G74840
Homeodomain-like superfamily protein
Chr3_-_19547171 1.40 AT3G52740.1
AT3G52740
hypothetical protein
Chr3_-_16914131 1.40 AT3G46030.1
HTB11
Histone superfamily protein
Chr4_+_12514899 1.40 AT4G24100.2
AT4G24100.1
AT4G24100.3
AT4G24100.4
AT4G24100
Protein kinase superfamily protein
Chr5_+_21607410 1.38 AT5G53280.1
PDV1
plastid division1
Chr3_+_19265141 1.38 AT3G51910.1
HSFA7A
heat shock transcription factor A7A
Chr4_+_6818058 1.37 AT4G11175.1
AT4G11175
Nucleic acid-binding, OB-fold-like protein
Chr3_+_10330547 1.37 AT3G27870.1
AT3G27870.2
AT3G27870.3
AT3G27870
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr1_-_2339321 1.37 AT1G07600.1
AT1G07590.1
MT1A
AT1G07590
metallothionein 1A
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr4_-_10572412 1.36 AT4G19380.1
AT4G19380.2
AT4G19380
Long-chain fatty alcohol dehydrogenase family protein
Chr5_-_25920254 1.35 AT5G64840.1
ABCF5
general control non-repressible 5
Chr5_-_7242857 1.35 AT5G21920.2
AT5G21920.1
YLMG2
YGGT family protein
Chr1_-_172948 1.34 AT1G01470.1
LEA14
Late embryogenesis abundant protein
Chr1_+_6688698 1.33 AT1G19350.1
AT1G19350.6
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_+_24674963 1.32 AT5G61380.1
TOC1
CCT motif -containing response regulator protein
Chr5_-_21483722 1.32 AT5G52980.2
AT5G52980.1
AT5G52980
ER-based factor for assembly of V-ATPase
Chr5_-_8358546 1.31 AT5G24470.1
PRR5
two-component response regulator-like protein
Chr5_+_26671273 1.31 AT5G66800.1
AT5G66800
membrane-associated kinase regulator-like protein
Chr4_+_5244865 1.31 AT4G08300.1
UMAMIT17
nodulin MtN21 /EamA-like transporter family protein
Chr1_-_17706460 1.31 AT1G48000.1
MYB112
myb domain protein 112
Chr4_-_18232011 1.29 AT4G39140.5
AT4G39140.1
AT4G39140.2
AT4G39140.4
AT4G39140.3
AT4G39140
RING/U-box superfamily protein
Chr5_-_25676823 1.28 AT5G64170.1
AT5G64170.2
AT5G64170.3
AT5G64170
dentin sialophosphoprotein-like protein
Chr1_+_20713499 1.28 AT1G55480.1
ZKT
protein containing PDZ domain, a K-box domain, and a TPR region
Chr5_-_14253434 1.28 AT5G36210.1
AT5G36210
alpha/beta-Hydrolases superfamily protein
Chr1_-_30113489 1.27 AT1G80050.2
APT2
adenine phosphoribosyl transferase 2
Chr4_+_12317036 1.26 AT4G23630.1
AT4G23630.2
BTI1
VIRB2-interacting protein 1
Chr5_+_16161449 1.26 AT5G40390.1
SIP1
Raffinose synthase family protein
Chr2_+_9530365 1.26 AT2G22450.1
RIBA2
riboflavin biosynthesis protein
Chr1_+_99865 1.26 AT1G01240.4
AT1G01240.2
AT1G01240.1
AT1G01240.3
AT1G01240.5
AT1G01240
transmembrane protein
Chr3_-_16898013 1.25 AT3G45980.1
HTB9
Histone superfamily protein
Chr2_-_15301026 1.24 AT2G36470.1
AT2G36470
DUF868 family protein, putative (DUF868)
Chr1_-_29965758 1.24 AT1G79630.2
AT1G79630.1
AT1G79630.7
AT1G79630.5
AT1G79630.4
AT1G79630.8
AT1G79630.3
AT1G79630.6
AT1G79630
Protein phosphatase 2C family protein
Chr1_-_28194068 1.24 AT1G75100.1
JAC1
J-domain protein required for chloroplast accumulation response 1
Chr1_+_11552426 1.23 AT1G32120.1
AT1G32120
serine/threonine-protein phosphatase 7 long form-like protein
Chr2_+_19000180 1.22 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
Chr2_+_12712879 1.22 AT2G29760.1
OTP81
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_416021 1.22 AT2G01910.1
ATMAP65-6
Microtubule associated protein (MAP65/ASE1) family protein
Chr5_+_105268 1.21 AT5G01260.3
AT5G01260.2
AT5G01260.1
AT5G01260
Carbohydrate-binding-like fold
Chr2_+_15669131 1.21 AT2G37330.1
ALS3
aluminum sensitive 3
Chr1_+_23899994 1.21 AT1G64385.1
AT1G64385.2
AT1G64385
transmembrane protein
Chr3_-_4782452 1.21 AT3G14330.1
AT3G14330
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_6805430 1.20 AT1G19680.1
AT1G19680
RING/U-box superfamily protein
Chr2_+_14892495 1.20 AT2G35380.2
AT2G35380.1
AT2G35380
Peroxidase superfamily protein
Chr4_-_8524217 1.20 AT4G14900.1
AT4G14900
FRIGIDA-like protein
Chr3_-_7834135 1.20 AT3G22190.2
AT3G22190.1
AT3G22190.3
IQD5
IQ-domain 5
Chr5_+_2167468 1.19 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
Chr1_+_22051133 1.19 AT1G59900.1
E1 ALPHA
pyruvate dehydrogenase complex E1 alpha subunit
Chr5_-_19287179 1.19 AT5G47550.1
AT5G47550
Cystatin/monellin superfamily protein
Chr4_+_12649985 1.19 AT4G24480.2
AT4G24480.1
AT4G24480.3
AT4G24480
Protein kinase superfamily protein
Chr5_-_9174598 1.19 AT5G26230.1
MAKR1
membrane-associated kinase regulator
Chr2_-_7910040 1.18 AT2G18170.1
MPK7
MAP kinase 7
Chr1_+_3157501 1.18 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr5_+_3032375 1.17 AT5G09760.1
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_-_26891284 1.17 AT1G71350.1
AT1G71350
eukaryotic translation initiation factor SUI1 family protein
Chr1_+_27786864 1.17 AT1G73885.1
AT1G73885
AT-rich interactive domain protein
Chr1_+_190408 1.17 AT1G01520.4
AT1G01520.2
AT1G01520.3
AT1G01520.1
AT1G01520.5
ASG4
Homeodomain-like superfamily protein
Chr5_-_26845294 1.17 AT5G67280.1
RLK
receptor-like kinase
Chr1_+_22051295 1.16 AT1G59900.2
E1 ALPHA
pyruvate dehydrogenase complex E1 alpha subunit
Chr4_-_11761057 1.16 AT4G22220.1
ISU1
SufE/NifU family protein
Chr4_+_16410791 1.16 AT4G34290.1
AT4G34290
SWIB/MDM2 domain superfamily protein
Chr1_+_18513624 1.16 AT1G49990.1
AT1G49990
F-box family protein
Chr1_+_3901950 1.15 AT1G11600.1
CYP77B1
cytochrome P450, family 77, subfamily B, polypeptide 1
Chr1_+_29404648 1.15 AT1G78150.2
AT1G78150.1
AT1G78150.3
AT1G78150
N-lysine methyltransferase
Chr3_-_9464676 1.15 AT3G25870.1
AT3G25870
hypothetical protein
Chr4_+_13527 1.14 AT4G00030.1
AT4G00030
Plastid-lipid associated protein PAP / fibrillin family protein
Chr5_+_16435906 1.14 AT5G41060.4
AT5G41060.2
AT5G41060
DHHC-type zinc finger family protein
Chr4_+_15205437 1.14 AT4G31340.1
AT4G31340.2
AT4G31340
myosin heavy chain-like protein
Chr2_+_10759724 1.14 AT2G25270.1
AT2G25270
transmembrane protein
Chr5_-_4933620 1.14 AT5G15190.2
AT5G15190.1
AT5G15190
hypothetical protein
Chr1_+_147043 1.14 AT1G01380.2
AT1G01380.1
AT1G01380.3
ETC1
Homeodomain-like superfamily protein
Chr1_+_8692630 1.14 AT1G24530.1
AT1G24530
Transducin/WD40 repeat-like superfamily protein
Chr3_-_7984833 1.14 AT3G22540.1
AT3G22540
hypothetical protein (DUF1677)
Chr3_+_7595680 1.14 AT3G21560.1
UGT84A2
UDP-Glycosyltransferase superfamily protein
Chr1_-_30114010 1.14 AT1G80050.1
APT2
adenine phosphoribosyl transferase 2
Chr5_+_3032019 1.14 AT5G09760.2
AT5G09760
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_+_17367492 1.13 AT2G41660.1
MIZ1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr3_+_2167730 1.13 AT3G06868.1
AT3G06868
vitellogenin-like protein
Chr5_-_14238026 1.12 AT5G36170.4
AT5G36170.2
AT5G36170.3
AT5G36170.1
HCF109
high chlorophyll fluorescent 109
Chr5_-_25429255 1.12 AT5G63520.1
AT5G63520
F-box/LRR protein
Chr2_-_7215553 1.11 AT2G16640.3
AT2G16640.2
AT2G16640.1
TOC132
multimeric translocon complex in the outer envelope membrane 132
Chr5_+_18816585 1.11 AT5G46390.2
AT5G46390.1
AT5G46390
Peptidase S41 family protein
Chr1_+_4713433 1.11 AT1G13740.1
AFP2
ABI five binding protein 2
Chr5_+_20282111 1.11 AT5G49880.1
MAD1
mitotic checkpoint family protein
Chr1_+_19484221 1.11 AT1G52320.5
AT1G52320.2
AT1G52320.1
AT1G52320
kinesin-like protein
Chr3_+_4693309 1.10 AT3G14160.1
AT3G14160
2-oxoglutarate-dependent dioxygenase family protein
Chr1_+_2882491 1.10 AT1G08970.2
AT1G08970.1
AT1G08970.3
AT1G08970.4
NF-YC9
nuclear factor Y, subunit C9
Chr1_-_23236447 1.10 AT1G62750.1
SCO1
Translation elongation factor EFG/EF2 protein
Chr1_-_19590281 1.09 AT1G52590.1
AT1G52590
Putative thiol-disulfide oxidoreductase DCC
Chr4_-_11648644 1.09 AT4G21960.1
PRXR1
Peroxidase superfamily protein
Chr3_-_20903080 1.09 AT3G56370.1
AT3G56370
Leucine-rich repeat protein kinase family protein
Chr3_-_3684871 1.08 AT3G11670.1
DGD1
UDP-Glycosyltransferase superfamily protein
Chr4_-_347191 1.08 AT4G00810.1
AT4G00810.2
AT4G00810
60S acidic ribosomal protein family
Chr4_+_13361869 1.08 AT4G26450.2
AT4G26450.1
AT4G26450
hypothetical protein
Chr5_+_22156304 1.07 AT5G54540.1
AT5G54540
Uncharacterized conserved protein (UCP012943)

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G45249

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.5 GO:0010266 response to vitamin B1(GO:0010266)
1.3 6.5 GO:0031000 response to caffeine(GO:0031000) response to alkaloid(GO:0043279)
1.3 7.6 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.8 0.8 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.7 2.7 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.6 1.7 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.6 3.9 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.5 1.6 GO:0055064 cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064)
0.5 2.1 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.5 1.5 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.5 1.0 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.5 2.0 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.5 2.8 GO:1904961 quiescent center organization(GO:1904961)
0.5 2.7 GO:0031116 positive regulation of microtubule polymerization(GO:0031116)
0.4 1.3 GO:0090143 nucleoid organization(GO:0090143)
0.4 2.1 GO:0010135 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.4 1.3 GO:0019593 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.4 1.7 GO:0048480 stigma development(GO:0048480)
0.4 2.0 GO:0042550 photosystem I stabilization(GO:0042550)
0.4 1.1 GO:1900033 regulation of trichome patterning(GO:1900032) negative regulation of trichome patterning(GO:1900033)
0.3 4.8 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.3 1.5 GO:0071260 cellular response to mechanical stimulus(GO:0071260)
0.3 1.5 GO:0010677 negative regulation of cellular carbohydrate metabolic process(GO:0010677)
0.3 0.9 GO:1901881 positive regulation of protein depolymerization(GO:1901881)
0.3 1.7 GO:0010338 leaf formation(GO:0010338)
0.3 9.1 GO:0006012 galactose metabolic process(GO:0006012)
0.3 2.0 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.3 1.1 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.3 2.4 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.3 1.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.2 4.6 GO:0006075 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 1.1 GO:0008608 attachment of spindle microtubules to kinetochore(GO:0008608)
0.2 1.1 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.2 2.8 GO:0048317 seed morphogenesis(GO:0048317)
0.2 0.6 GO:0006056 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) response to cobalt ion(GO:0032025)
0.2 0.4 GO:0010343 singlet oxygen-mediated programmed cell death(GO:0010343)
0.2 1.9 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.2 0.7 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.2 2.0 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.2 1.1 GO:2000306 positive regulation of photomorphogenesis(GO:2000306)
0.2 28.2 GO:0048511 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.2 0.7 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.2 0.7 GO:0009660 amyloplast organization(GO:0009660)
0.2 1.1 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.2 0.6 GO:0033512 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.2 0.5 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.2 1.9 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.2 1.4 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.2 0.5 GO:0010541 acropetal auxin transport(GO:0010541)
0.2 0.9 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.2 0.8 GO:0000912 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.1 2.2 GO:0000919 cell plate assembly(GO:0000919)
0.1 0.4 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.1 0.9 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.1 2.5 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 0.4 GO:0090549 response to carbon starvation(GO:0090549)
0.1 0.6 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.1 0.6 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 2.0 GO:0051220 maintenance of protein localization in endoplasmic reticulum(GO:0035437) cytoplasmic sequestering of protein(GO:0051220)
0.1 0.8 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.1 0.6 GO:0046477 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.1 1.8 GO:0010044 response to aluminum ion(GO:0010044)
0.1 0.4 GO:0048255 mRNA stabilization(GO:0048255)
0.1 0.9 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.1 0.7 GO:0010589 leaf proximal/distal pattern formation(GO:0010589)
0.1 8.7 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 0.8 GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly(GO:0010258)
0.1 8.1 GO:0009631 cold acclimation(GO:0009631)
0.1 0.6 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.4 GO:1902448 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 1.0 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.1 0.5 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.7 GO:0043981 histone H4-K5 acetylation(GO:0043981)
0.1 0.4 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 1.4 GO:0017157 regulation of exocytosis(GO:0017157)
0.1 0.5 GO:0010042 response to manganese ion(GO:0010042)
0.1 0.6 GO:0071277 cellular response to calcium ion(GO:0071277)
0.1 0.7 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.1 1.6 GO:0010274 hydrotropism(GO:0010274)
0.1 0.3 GO:0016540 protein autoprocessing(GO:0016540)
0.1 0.6 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.1 0.9 GO:0030835 regulation of actin filament depolymerization(GO:0030834) negative regulation of actin filament depolymerization(GO:0030835) actin filament capping(GO:0051693)
0.1 1.8 GO:0071329 cellular response to sucrose stimulus(GO:0071329)
0.1 1.6 GO:1902074 response to salt(GO:1902074)
0.1 0.6 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.1 0.2 GO:0010447 response to acidic pH(GO:0010447)
0.1 3.8 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.1 1.4 GO:0009306 protein secretion(GO:0009306)
0.1 1.0 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 0.5 GO:0010390 histone monoubiquitination(GO:0010390)
0.1 1.3 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.1 1.0 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.1 0.4 GO:0015739 sialic acid transport(GO:0015739)
0.1 1.0 GO:0010206 photosystem II repair(GO:0010206)
0.1 0.8 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.1 0.4 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.5 GO:0060919 auxin influx(GO:0060919)
0.1 0.4 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.1 0.4 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.1 0.8 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.1 0.3 GO:0009830 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.1 0.4 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.1 1.1 GO:0055083 monovalent inorganic anion homeostasis(GO:0055083)
0.1 1.0 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.1 0.7 GO:0034312 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.1 0.8 GO:0010232 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.1 1.1 GO:0019253 carbon fixation(GO:0015977) reductive pentose-phosphate cycle(GO:0019253)
0.1 0.7 GO:2001022 positive regulation of response to DNA damage stimulus(GO:2001022)
0.1 0.8 GO:0010315 auxin efflux(GO:0010315)
0.1 1.7 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.1 0.2 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 0.3 GO:0019323 pentose catabolic process(GO:0019323)
0.1 1.4 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.1 1.8 GO:0009718 anthocyanin-containing compound biosynthetic process(GO:0009718)
0.1 0.6 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 0.6 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.1 0.3 GO:1902456 regulation of stomatal opening(GO:1902456)
0.1 5.0 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.1 1.7 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.1 0.7 GO:0009089 lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.1 0.7 GO:0010048 vernalization response(GO:0010048)
0.1 1.2 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 0.2 GO:0046203 spermidine catabolic process(GO:0046203)
0.1 0.8 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.1 2.1 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.3 GO:0016578 histone deubiquitination(GO:0016578)
0.1 0.7 GO:0009938 negative regulation of gibberellic acid mediated signaling pathway(GO:0009938)
0.1 0.9 GO:0045839 negative regulation of mitotic nuclear division(GO:0045839)
0.1 0.7 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.1 1.1 GO:0006415 translational termination(GO:0006415)
0.1 0.2 GO:0080168 abscisic acid transport(GO:0080168)
0.1 0.5 GO:0030308 negative regulation of cell growth(GO:0030308) regulation of stomatal complex patterning(GO:2000037)
0.1 1.0 GO:0009750 response to fructose(GO:0009750)
0.1 1.2 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 2.0 GO:0009740 gibberellic acid mediated signaling pathway(GO:0009740)
0.1 1.9 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.1 1.7 GO:0006284 base-excision repair(GO:0006284)
0.1 1.9 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 2.7 GO:0061077 chaperone-mediated protein folding(GO:0061077)
0.1 0.4 GO:0010222 stem vascular tissue pattern formation(GO:0010222)
0.0 2.5 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 1.2 GO:0007030 Golgi organization(GO:0007030)
0.0 0.8 GO:0006108 malate metabolic process(GO:0006108)
0.0 0.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.4 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.4 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.3 GO:0010067 procambium histogenesis(GO:0010067)
0.0 1.1 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.6 GO:2000030 regulation of response to red or far red light(GO:2000030)
0.0 1.1 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 1.1 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.8 GO:0055070 copper ion homeostasis(GO:0055070)
0.0 0.2 GO:0000719 photoreactive repair(GO:0000719)
0.0 0.3 GO:0072337 modified amino acid transport(GO:0072337)
0.0 0.2 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.1 GO:0045717 negative regulation of fatty acid biosynthetic process(GO:0045717)
0.0 2.7 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 0.3 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.1 GO:0031023 microtubule organizing center organization(GO:0031023)
0.0 0.4 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.4 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 0.3 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.2 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.0 1.9 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 1.0 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 2.2 GO:0042274 ribosomal small subunit biogenesis(GO:0042274)
0.0 0.5 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.9 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.9 GO:0042023 DNA endoreduplication(GO:0042023)
0.0 0.5 GO:0030042 actin filament depolymerization(GO:0030042)
0.0 0.2 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.2 GO:0009061 anaerobic respiration(GO:0009061)
0.0 1.2 GO:0019761 S-glycoside biosynthetic process(GO:0016144) glycosinolate biosynthetic process(GO:0019758) glucosinolate biosynthetic process(GO:0019761)
0.0 0.4 GO:0006997 nucleus organization(GO:0006997)
0.0 0.4 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.2 GO:0080144 amino acid homeostasis(GO:0080144)
0.0 0.3 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.7 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 1.2 GO:0009817 defense response to fungus, incompatible interaction(GO:0009817)
0.0 0.9 GO:0009910 negative regulation of flower development(GO:0009910)
0.0 0.3 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.9 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.4 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.4 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.1 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.0 0.2 GO:0048359 mucilage metabolic process involved in seed coat development(GO:0048359)
0.0 0.3 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.1 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.0 0.5 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 0.1 GO:0010731 protein glutathionylation(GO:0010731)
0.0 0.8 GO:0009627 systemic acquired resistance(GO:0009627)
0.0 0.1 GO:0051095 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.2 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 1.8 GO:0009553 embryo sac development(GO:0009553)
0.0 0.4 GO:0006405 RNA export from nucleus(GO:0006405)
0.0 0.7 GO:0006413 translational initiation(GO:0006413)
0.0 0.2 GO:0010305 leaf vascular tissue pattern formation(GO:0010305)
0.0 0.4 GO:0032506 cytokinesis by cell plate formation(GO:0000911) cytokinetic process(GO:0032506) mitotic cytokinetic process(GO:1902410)
0.0 0.5 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 0.2 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.1 GO:0010540 basipetal auxin transport(GO:0010540)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.4 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.6 2.9 GO:0010007 magnesium chelatase complex(GO:0010007)
0.4 1.5 GO:0031353 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.3 2.7 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.3 1.0 GO:0031977 thylakoid lumen(GO:0031977)
0.3 1.3 GO:0009509 chromoplast(GO:0009509)
0.2 4.6 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.2 1.1 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.2 2.4 GO:0098827 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.1 1.7 GO:0048500 signal recognition particle(GO:0048500)
0.1 0.4 GO:1990298 bub1-bub3 complex(GO:1990298)
0.1 2.7 GO:0009574 preprophase band(GO:0009574)
0.1 0.9 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.1 8.0 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.1 1.6 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.1 0.5 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.1 0.5 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.1 0.3 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 5.8 GO:0009527 plastid outer membrane(GO:0009527)
0.1 1.5 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.1 1.6 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.1 0.6 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.1 4.2 GO:0009706 chloroplast inner membrane(GO:0009706)
0.1 1.6 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.1 1.1 GO:0000776 kinetochore(GO:0000776) mitotic spindle(GO:0072686)
0.1 0.5 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 1.1 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.1 0.6 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.1 1.6 GO:0000419 DNA-directed RNA polymerase V complex(GO:0000419)
0.1 0.5 GO:0010369 chromocenter(GO:0010369)
0.1 0.4 GO:0005763 organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763)
0.1 0.4 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.1 0.8 GO:0030131 clathrin adaptor complex(GO:0030131)
0.1 0.5 GO:0005677 chromatin silencing complex(GO:0005677)
0.1 3.1 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.9 GO:0005769 early endosome(GO:0005769)
0.0 0.2 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.0 0.9 GO:0009508 plastid chromosome(GO:0009508)
0.0 0.2 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 2.1 GO:0009543 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 1.3 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 3.3 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.2 GO:0043036 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.0 1.9 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.2 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.0 1.5 GO:0016592 mediator complex(GO:0016592)
0.0 0.5 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.0 37.8 GO:0005794 Golgi apparatus(GO:0005794)
0.0 0.2 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.9 GO:0008287 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.2 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.0 0.3 GO:0000786 nucleosome(GO:0000786)
0.0 0.4 GO:0042651 thylakoid membrane(GO:0042651)
0.0 1.4 GO:0005635 nuclear envelope(GO:0005635)
0.0 0.5 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 2.4 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 0.1 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.0 0.1 GO:0009897 external side of plasma membrane(GO:0009897)
0.0 2.1 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.3 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.0 2.2 GO:0099503 secretory vesicle(GO:0099503)
0.0 0.5 GO:0009524 phragmoplast(GO:0009524)
0.0 0.4 GO:0009504 cell plate(GO:0009504)
0.0 1.8 GO:0033646 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 2.7 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 0.5 GO:0032040 small-subunit processome(GO:0032040)
0.0 1.1 GO:0005759 mitochondrial matrix(GO:0005759)
0.0 0.6 GO:0000793 condensed chromosome(GO:0000793)
0.0 10.9 GO:0005773 vacuole(GO:0005773)
0.0 0.1 GO:0031209 SCAR complex(GO:0031209)
0.0 30.4 GO:0005886 plasma membrane(GO:0005886)
0.0 0.1 GO:0031083 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.1 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 10.1 GO:0044434 chloroplast part(GO:0044434)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.3 7.6 GO:0019904 protein domain specific binding(GO:0019904)
1.1 9.7 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
1.0 5.0 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.8 6.5 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.8 4.5 GO:0080041 ADP-sugar diphosphatase activity(GO:0019144) ADP-ribose pyrophosphohydrolase activity(GO:0080041)
0.8 3.8 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.7 2.7 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.7 2.0 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.7 2.0 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.5 1.6 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.5 2.9 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.4 5.5 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.4 1.2 GO:0005046 KDEL sequence binding(GO:0005046)
0.4 1.5 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.4 1.1 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.3 2.4 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.3 1.3 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.3 2.1 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.3 4.8 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.3 0.9 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.3 1.1 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.3 1.4 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.3 1.1 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.3 2.3 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.2 1.0 GO:0016420 malonyltransferase activity(GO:0016420)
0.2 4.6 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.2 0.7 GO:0008481 sphinganine kinase activity(GO:0008481)
0.2 1.5 GO:0032977 membrane insertase activity(GO:0032977)
0.2 0.6 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.6 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.2 0.6 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.2 0.7 GO:0047517 1,4-beta-D-xylan synthase activity(GO:0047517)
0.2 1.1 GO:0030527 structural constituent of chromatin(GO:0030527)
0.2 0.9 GO:0030371 translation repressor activity(GO:0030371)
0.2 2.1 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.2 0.7 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.2 1.0 GO:0003913 DNA photolyase activity(GO:0003913)
0.2 1.1 GO:0016149 translation release factor activity, codon specific(GO:0016149)
0.2 0.6 GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.2 1.1 GO:0004567 beta-mannosidase activity(GO:0004567)
0.2 6.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 0.4 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.1 1.4 GO:0017022 myosin binding(GO:0017022)
0.1 0.7 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 1.1 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.8 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.1 1.0 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.6 GO:0004348 glucosylceramidase activity(GO:0004348)
0.1 0.4 GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963)
0.1 0.7 GO:0035197 siRNA binding(GO:0035197)
0.1 1.6 GO:0008312 7S RNA binding(GO:0008312)
0.1 0.5 GO:0031409 pigment binding(GO:0031409)
0.1 1.7 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.1 0.5 GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)
0.1 1.9 GO:0016018 cyclosporin A binding(GO:0016018)
0.1 0.6 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.1 2.9 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.1 1.1 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.1 0.4 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.1 0.4 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.8 GO:0004470 malic enzyme activity(GO:0004470) malate dehydrogenase (decarboxylating) (NAD+) activity(GO:0004471)
0.1 0.4 GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity(GO:0004719)
0.1 0.6 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 2.5 GO:0004568 chitinase activity(GO:0004568)
0.1 0.6 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.1 0.3 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.1 1.1 GO:2001070 starch binding(GO:2001070)
0.1 0.4 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.1 0.8 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.1 1.2 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1 1.1 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 1.2 GO:0019210 kinase inhibitor activity(GO:0019210)
0.1 0.3 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.1 1.5 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.1 1.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.1 1.0 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.1 2.4 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.3 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.1 0.5 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.1 0.4 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.1 1.2 GO:0008198 ferrous iron binding(GO:0008198)
0.1 1.0 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.1 4.9 GO:0004650 polygalacturonase activity(GO:0004650)
0.1 1.6 GO:0030276 clathrin binding(GO:0030276)
0.1 0.6 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.8 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 1.2 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.1 0.5 GO:0051139 metal ion:proton antiporter activity(GO:0051139)
0.1 1.0 GO:0004124 cysteine synthase activity(GO:0004124)
0.1 0.2 GO:0009374 biotin binding(GO:0009374)
0.1 0.7 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.1 3.6 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.1 0.2 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 2.2 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.1 0.2 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.1 3.9 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.1 0.2 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.1 0.7 GO:0043733 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 0.2 GO:0010242 oxygen evolving activity(GO:0010242)
0.1 1.7 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.1 0.2 GO:0016920 pyroglutamyl-peptidase activity(GO:0016920)
0.1 0.8 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 0.5 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.1 3.4 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.1 0.7 GO:0008097 5S rRNA binding(GO:0008097)
0.1 0.5 GO:0051747 cytosine C-5 DNA demethylase activity(GO:0051747)
0.1 0.3 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.1 0.2 GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity(GO:0033925)
0.1 0.5 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.0 1.8 GO:0043022 ribosome binding(GO:0043022)
0.0 0.3 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.2 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.3 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 0.8 GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
0.0 0.3 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.2 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.4 GO:0030060 malate dehydrogenase activity(GO:0016615) L-malate dehydrogenase activity(GO:0030060)
0.0 0.4 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.0 0.7 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 0.8 GO:0016780 phosphotransferase activity, for other substituted phosphate groups(GO:0016780)
0.0 0.3 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.6 GO:0019903 protein phosphatase binding(GO:0019903)
0.0 1.2 GO:0005262 calcium channel activity(GO:0005262)
0.0 0.4 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 1.3 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.5 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 1.6 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 1.2 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.6 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.3 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 0.3 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.0 0.5 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.3 GO:0072349 modified amino acid transmembrane transporter activity(GO:0072349)
0.0 0.1 GO:0015245 fatty acid transporter activity(GO:0015245)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.2 GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.0 4.6 GO:0005507 copper ion binding(GO:0005507)
0.0 0.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.4 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 1.7 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.5 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.2 GO:0010011 auxin binding(GO:0010011)
0.0 0.1 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.0 1.6 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 4.9 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.7 GO:0005048 signal sequence binding(GO:0005048)
0.0 0.3 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 2.5 GO:0003779 actin binding(GO:0003779)
0.0 0.9 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.2 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 2.4 GO:0008017 microtubule binding(GO:0008017)
0.0 2.0 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.9 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.2 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 0.2 GO:0015562 efflux transmembrane transporter activity(GO:0015562)
0.0 0.9 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.2 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.7 GO:0004888 transmembrane signaling receptor activity(GO:0004888)
0.0 0.5 GO:0033612 receptor serine/threonine kinase binding(GO:0033612)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.3 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.1 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.2 1.3 PID MTOR 4PATHWAY mTOR signaling pathway
0.1 0.7 PID S1P S1P1 PATHWAY S1P1 pathway
0.1 0.7 PID AP1 PATHWAY AP-1 transcription factor network
0.1 0.3 ST WNT BETA CATENIN PATHWAY Wnt/beta-catenin Pathway
0.1 0.3 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.3 PID RAC1 PATHWAY RAC1 signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.2 0.7 REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS Genes involved in Sphingolipid de novo biosynthesis
0.1 0.4 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.1 0.4 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.1 2.5 REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION Genes involved in Influenza Viral RNA Transcription and Replication
0.1 0.3 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.1 0.5 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.3 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.0 0.7 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates