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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G44830
Z-value: 1.28
Transcription factors associated with AT1G44830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G44830
|
AT1G44830 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G44830 | arTal_v1_Chr1_+_16933699_16933699 | 0.08 | 7.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.48 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_14304921_14304921 Show fit | 1.74 |
AT4G29020.2
AT4G29020.1 |
glycine-rich protein |
|
| arTal_v1_Chr1_-_2190784_2190784 Show fit | 1.68 |
AT1G07135.1
|
glycine-rich protein |
|
| arTal_v1_Chr4_-_18275017_18275216 Show fit | 1.53 |
AT4G39260.4
AT4G39260.3 AT4G39260.2 AT4G39260.1 |
cold, circadian rhythm, and RNA binding 1 |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 1.46 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.42 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 1.38 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr5_-_3278461_3278461 Show fit | 1.38 |
AT5G10430.1
|
arabinogalactan protein 4 |
|
| arTal_v1_Chr4_-_17044555_17044599 Show fit | 1.33 |
AT4G36020.3
AT4G36020.1 AT4G36020.2 |
cold shock domain protein 1 |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.30 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G44830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 6.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 2.6 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.1 | 2.5 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.1 | 2.3 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 2.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.8 | GO:0009554 | megasporogenesis(GO:0009554) |
| 0.1 | 1.8 | GO:0006030 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.1 | 1.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.5 | 1.4 | GO:0010198 | synergid death(GO:0010198) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 1.4 | GO:0033646 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.2 | 1.3 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.1 | 1.2 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.9 | GO:0005762 | mitochondrial large ribosomal subunit(GO:0005762) |
| 0.0 | 0.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 0.6 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.2 | 0.5 | GO:0009514 | glyoxysome(GO:0009514) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 2.3 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.4 | 2.0 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.1 | 1.8 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 1.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 1.5 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.5 | 1.4 | GO:0004013 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
| 0.1 | 1.3 | GO:0002020 | protease binding(GO:0002020) |
| 0.1 | 1.2 | GO:0016207 | 4-coumarate-CoA ligase activity(GO:0016207) |
| 0.1 | 1.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |