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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G44830

Z-value: 1.28

Transcription factors associated with AT1G44830

Gene Symbol Gene ID Gene Info
AT1G44830 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G44830arTal_v1_Chr1_+_16933699_169336990.087.9e-01Click!

Activity profile of AT1G44830 motif

Sorted Z-values of AT1G44830 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_19036938 2.48 AT5G46890.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_14304921 1.74 AT4G29020.2
AT4G29020.1
glycine-rich protein
Chr1_-_2190784 1.68 AT1G07135.1
glycine-rich protein
Chr4_-_18275017 1.53 AT4G39260.4
AT4G39260.3
AT4G39260.2
AT4G39260.1
cold, circadian rhythm, and RNA binding 1
Chr4_+_9759203 1.46 AT4G17500.1
ethylene responsive element binding factor 1
Chr3_-_8589754 1.42 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr4_-_17606924 1.38 AT4G37450.1
AT4G37450.2
arabinogalactan protein 18
Chr5_-_3278461 1.38 AT5G10430.1
arabinogalactan protein 4
Chr4_-_17044555 1.33 AT4G36020.3
AT4G36020.1
AT4G36020.2
cold shock domain protein 1
Chr4_-_9754161 1.30 AT4G17490.1
ethylene responsive element binding factor 6
Chr3_-_3420932 1.27 AT3G10930.1
hypothetical protein
Chr3_-_1261634 1.26 AT3G04640.2
AT3G04640.1
AT3G04640.3
glycine-rich protein
Chr5_-_24987811 1.20 AT5G62210.1
Embryo-specific protein 3, (ATS3)
Chr4_-_7493080 1.16 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr4_+_17388649 1.15 AT4G36900.1
related to AP2 10
Chr4_+_14307195 1.14 AT4G29030.1
Putative membrane lipoprotein
Chr2_+_3618058 1.09 AT2G08986.1
hypothetical protein
Chr1_-_9956960 1.05 AT1G28370.1
AT1G28370.2
ERF domain protein 11
Chr3_-_18373147 1.05 AT3G49570.1
response to low sulfur 3
Chr3_+_22142856 1.04 AT3G59940.1
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_16237280 1.03 AT2G38870.1
Serine protease inhibitor, potato inhibitor I-type family protein
Chr1_+_28776861 1.03 AT1G76680.2
12-oxophytodienoate reductase 1
Chr1_+_28776626 1.02 AT1G76680.1
12-oxophytodienoate reductase 1
Chr3_-_8064649 0.91 AT3G22800.1
Leucine-rich repeat (LRR) family protein
Chr1_-_24171502 0.91 AT1G65060.2
AT1G65060.1
4-coumarate:CoA ligase 3
Chr1_-_9406369 0.91 AT1G27090.1
glycine-rich protein
Chr5_+_17154718 0.91 AT5G42780.1
homeobox protein 27
Chr2_-_16545746 0.89 AT2G39700.1
expansin A4
Chr4_-_16168711 0.89 AT4G33660.1
cysteine-rich TM module stress tolerance protein
Chr2_-_7765276 0.89 AT2G17870.1
cold shock domain protein 3
Chr5_+_6826365 0.88 AT5G20230.1
blue-copper-binding protein
Chr1_-_575085 0.86 AT1G02660.1
alpha/beta-Hydrolases superfamily protein
Chr4_-_11278318 0.86 AT4G21140.1
copper ion-binding protein
Chr5_+_23734273 0.86 AT5G58770.1
Undecaprenyl pyrophosphate synthetase family protein
Chr4_+_14065992 0.85 AT4G28460.1
transmembrane protein
Chr1_+_9425280 0.82 AT1G27130.1
glutathione S-transferase tau 13
Chr4_-_7545326 0.82 AT4G12880.2
early nodulin-like protein 19
Chr3_+_20896332 0.81 AT3G56360.1
hypothetical protein
Chr5_-_671687 0.80 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr4_-_8854706 0.78 AT4G15490.1
UDP-Glycosyltransferase superfamily protein
Chr4_+_11907355 0.77 AT4G22620.1
SAUR-like auxin-responsive protein family
Chr4_-_7545512 0.77 AT4G12880.1
early nodulin-like protein 19
Chr1_+_3999157 0.76 AT1G11850.2
AT1G11850.4
AT1G11850.3
AT1G11850.1
transmembrane protein
Chr1_+_2032338 0.76 AT1G06640.3
AT1G06640.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_6100964 0.76 AT1G17745.1
AT1G17745.2
D-3-phosphoglycerate dehydrogenase
Chr1_+_2031626 0.75 AT1G06640.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_15507176 0.75 AT4G32070.2
AT4G32070.1
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Chr5_+_23384255 0.75 AT5G57710.1
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr4_+_17583992 0.75 AT4G37400.1
cytochrome P450, family 81, subfamily F, polypeptide 3
Chr1_-_8912642 0.75 AT1G25400.2
transmembrane protein
Chr1_-_8912822 0.74 AT1G25400.1
transmembrane protein
Chr1_+_28163344 0.74 AT1G75000.1
GNS1/SUR4 membrane protein family
Chr1_-_2282828 0.74 AT1G07430.1
highly ABA-induced PP2C protein 2
Chr4_-_17267472 0.72 AT4G36610.1
alpha/beta-Hydrolases superfamily protein
Chr2_+_14003128 0.71 AT2G32990.1
glycosyl hydrolase 9B8
Chr4_+_8344349 0.71 AT4G14540.1
nuclear factor Y, subunit B3
Chr1_+_6061895 0.71 AT1G17620.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_+_295207 0.71 AT1G01810.1
hypothetical protein
Chr1_+_23333619 0.70 AT1G62981.1
AT1G62981.2
AT1G62981.3
transmembrane protein, putative (DUF1191)
Chr1_+_26464226 0.70 AT1G70270.2
AT1G70270.1
transcription factor
Chr5_-_17185032 0.67 AT5G42860.1
late embryogenesis abundant protein, group 2
Chr3_-_5777841 0.67 AT3G16920.1
chitinase-like protein
Chr4_+_11491482 0.67 AT4G21620.2
glycine-rich protein
Chr5_+_8005097 0.67 AT5G23730.1
Transducin/WD40 repeat-like superfamily protein
Chr5_-_6413259 0.67 AT5G19110.1
AT5G19110.2
Eukaryotic aspartyl protease family protein
Chr1_-_1349478 0.67 AT1G04800.1
glycine-rich protein
Chr1_+_618061 0.66 AT1G02810.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_2905931 0.66 AT3G09440.4
AT3G09440.2
AT3G09440.1
Heat shock protein 70 (Hsp 70) family protein
Chr3_+_9195334 0.66 AT3G25250.1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr3_-_2905729 0.66 AT3G09440.3
Heat shock protein 70 (Hsp 70) family protein
Chr2_+_15165213 0.66 AT2G36120.1
Glycine-rich protein family
Chr1_+_24824356 0.66 AT1G66540.1
AT1G66540.2
Cytochrome P450 superfamily protein
Chr4_+_17590772 0.65 AT4G37410.1
cytochrome P450, family 81, subfamily F, polypeptide 4
Chr3_+_21059785 0.64 AT3G56880.1
VQ motif-containing protein
Chr1_-_25446952 0.64 AT1G67865.1
hypothetical protein
Chr2_-_6744835 0.64 AT2G15440.1
polysaccharide biosynthesis protein (DUF579)
Chr5_+_5935038 0.63 AT5G17920.1
AT5G17920.2
Cobalamin-independent synthase family protein
Chr3_-_1010573 0.63 AT3G03920.1
H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
Chr1_+_11931149 0.63 AT1G32928.1
Avr9/Cf-9 rapidly elicited protein
Chr5_-_25843555 0.63 AT5G64660.1
CYS, MET, PRO, and GLY protein 2
Chr3_+_5505360 0.63 AT3G16240.1
delta tonoplast integral protein
Chr2_+_19508929 0.63 AT2G47550.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr2_+_16463347 0.63 AT2G39430.1
Disease resistance-responsive (dirigent-like protein) family protein
Chr2_-_13864596 0.62 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
glycine-rich protein 23
Chr3_-_5778052 0.62 AT3G16920.2
chitinase-like protein
Chr1_+_30194618 0.62 AT1G80310.1
sulfate transmembrane transporter
Chr2_-_16377168 0.61 AT2G39220.1
PATATIN-like protein 6
Chr1_-_30352208 0.61 AT1G80760.1
NOD26-like intrinsic protein 6;1
Chr3_+_5133444 0.60 AT3G15240.2
Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Chr2_-_7145345 0.60 AT2G16485.1
AT2G16485.2
GW repeat- and PHD finger-containing protein NERD
Chr2_+_1063943 0.60 AT2G03505.1
AT2G03505.2
AT2G03505.3
AT2G03505.4
Carbohydrate-binding X8 domain superfamily protein
Chr2_-_7915872 0.60 AT2G18190.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_-_1547798 0.60 AT1G05300.2
AT1G05300.1
zinc transporter 5 precursor
Chr5_+_24167996 0.60 AT5G60020.1
AT5G60020.2
laccase 17
Chr2_+_1676999 0.60 AT2G04780.2
FASCICLIN-like arabinoogalactan 7
Chr3_-_17146867 0.59 AT3G46570.1
Glycosyl hydrolase superfamily protein
Chr5_-_974178 0.59 AT5G03720.2
AT5G03720.1
heat shock transcription factor A3
Chr2_+_1676717 0.59 AT2G04780.1
FASCICLIN-like arabinoogalactan 7
Chr3_+_3249513 0.58 AT3G10450.3
AT3G10450.2
AT3G10450.1
AT3G10450.4
serine carboxypeptidase-like 7
Chr1_-_1307973 0.58 AT1G04680.1
Pectin lyase-like superfamily protein
Chr1_+_25961604 0.58 AT1G69050.1
hypothetical protein
Chr5_-_23009709 0.58 AT5G56880.1
hypothetical protein
Chr1_+_28107822 0.58 AT1G74810.2
AT1G74810.5
AT1G74810.3
AT1G74810.4
AT1G74810.6
AT1G74810.7
AT1G74810.1
HCO3- transporter family
Chr3_-_1435526 0.58 AT3G05130.1
paramyosin-like protein
Chr5_-_24903131 0.58 AT5G61990.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr5_-_834549 0.58 AT5G03380.1
Heavy metal transport/detoxification superfamily protein
Chr3_-_1855063 0.58 AT3G06130.2
AT3G06130.1
Heavy metal transport/detoxification superfamily protein
Chr3_+_11252807 0.58 AT3G29320.1
Glycosyl transferase, family 35
Chr1_+_27736546 0.57 AT1G73750.2
AT1G73750.1
alpha/beta hydrolase family protein
Chr1_+_2927502 0.57 AT1G09070.1
soybean gene regulated by cold-2
Chr2_+_8940833 0.57 AT2G20750.2
AT2G20750.1
expansin B1
Chr1_+_11797330 0.56 AT1G32630.1
AT1G32630.2
FAM50A-like protein
Chr2_+_15158561 0.56 AT2G36090.1
F-box family protein
Chr2_+_15514923 0.55 AT2G36950.1
Heavy metal transport/detoxification superfamily protein
Chr5_+_25322975 0.55 AT5G63130.2
AT5G63130.1
Octicosapeptide/Phox/Bem1p family protein
Chr1_+_20061405 0.55 AT1G53730.2
AT1G53730.1
STRUBBELIG-receptor family 6
Chr2_+_9937792 0.55 AT2G23340.1
DREB and EAR motif protein 3
Chr1_-_25447622 0.55 AT1G67865.2
hypothetical protein
Chr2_-_15884013 0.55 AT2G37950.1
RING/FYVE/PHD zinc finger superfamily protein
Chr1_+_7346156 0.54 AT1G21010.1
poly polymerase
Chr4_-_10765781 0.54 AT4G19810.1
AT4G19810.2
Glycosyl hydrolase family protein with chitinase insertion domain-containing protein
Chr2_-_16865587 0.54 AT2G40380.1
prenylated RAB acceptor 1.B2
Chr2_+_17945662 0.54 AT2G43150.1
Proline-rich extensin-like family protein
Chr2_+_17206452 0.54 AT2G41260.2
AT2G41260.1
glycine-rich protein / late embryogenesis abundant protein (M17)
Chr3_-_20431597 0.54 AT3G55120.1
Chalcone-flavanone isomerase family protein
Chr1_-_7040231 0.54 AT1G20330.1
sterol methyltransferase 2
Chr3_+_8357569 0.54 AT3G23370.4
AT3G23370.3
AT3G23370.2
AT3G23370.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_27640643 0.53 AT1G73500.1
MAP kinase kinase 9
Chr2_-_8525238 0.53 AT2G19780.1
Leucine-rich repeat (LRR) family protein
Chr5_-_834289 0.53 AT5G03380.2
Heavy metal transport/detoxification superfamily protein
Chr3_+_17949416 0.53 AT3G48460.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_+_16295140 0.53 AT2G39020.1
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr3_+_19271347 0.53 AT3G51930.1
Transducin/WD40 repeat-like superfamily protein
Chr1_-_26768215 0.53 AT1G70990.1
proline-rich family protein
Chr2_-_6453797 0.53 AT2G14960.1
Auxin-responsive GH3 family protein
Chr5_-_18579241 0.52 AT5G45800.2
AT5G45800.1
Leucine-rich repeat protein kinase family protein
Chr2_+_19109513 0.52 AT2G46535.1
hypothetical protein
Chr4_-_18073182 0.52 AT4G38680.1
glycine rich protein 2
Chr1_-_15607966 0.52 AT1G41830.1
SKU5-similar 6
Chr4_-_17181466 0.52 AT4G36360.1
beta-galactosidase 3
Chr3_-_7656053 0.52 AT3G21720.1
isocitrate lyase
Chr1_+_27308513 0.51 AT1G72520.1
PLAT/LH2 domain-containing lipoxygenase family protein
Chr5_+_4087689 0.51 AT5G12940.1
Leucine-rich repeat (LRR) family protein
Chr4_-_17181261 0.51 AT4G36360.2
beta-galactosidase 3
Chr5_+_24168245 0.51 AT5G60020.3
laccase 17
Chr3_-_21346235 0.50 AT3G57640.1
Protein kinase superfamily protein
Chr3_-_18834834 0.50 AT3G50685.1
anti-muellerian hormone type-2 receptor
Chr5_-_5904380 0.50 AT5G17860.2
calcium exchanger 7
Chr4_+_11491264 0.49 AT4G21620.1
glycine-rich protein
Chr2_-_11777529 0.49 AT2G27580.2
AT2G27580.1
A20/AN1-like zinc finger family protein
Chr5_-_5904532 0.49 AT5G17860.1
calcium exchanger 7
Chr4_+_14418556 0.49 AT4G29240.1
AT4G29240.2
Leucine-rich repeat (LRR) family protein
Chr5_+_16202142 0.49 AT5G40460.1
cyclin-dependent kinase inhibitor SMR3-like protein
Chr5_+_1192259 0.48 AT5G04280.2
AT5G04280.1
AT5G04280.3
AT5G04280.4
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
Chr1_+_20793720 0.48 AT1G55640.1
prenylated RAB acceptor 1.G1
Chr2_+_163954 0.48 AT2G01340.1
plastid movement impaired protein
Chr5_-_26096114 0.48 AT5G65300.1
hypothetical protein
Chr1_+_3031046 0.48 AT1G09390.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_-_6436046 0.48 AT3G18710.1
plant U-box 29
Chr1_+_23112933 0.48 AT1G62440.1
leucine-rich repeat/extensin 2
Chr4_+_160643 0.47 AT4G00360.1
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr5_-_24932686 0.47 AT5G62070.1
IQ-domain 23
Chr2_+_8093220 0.47 AT2G18670.1
RING/U-box superfamily protein
Chr1_+_365165 0.46 AT1G02065.2
AT1G02065.1
squamosa promoter binding protein-like 8
Chr1_+_7846459 0.46 AT1G22220.1
F-box family protein
Chr2_+_15750915 0.46 AT2G37530.1
forkhead box protein G1
Chr3_+_9480746 0.46 AT3G25900.1
AT3G25900.3
AT3G25900.2
Homocysteine S-methyltransferase family protein
Chr2_-_11685342 0.46 AT2G27310.1
F-box family protein
Chr3_-_18594715 0.46 AT3G50140.1
AT3G50140.2
transmembrane protein, putative (DUF247)
Chr3_+_3012094 0.45 AT3G09820.2
adenosine kinase 1
Chr3_+_3011780 0.45 AT3G09820.1
adenosine kinase 1
Chr2_+_17886101 0.45 AT2G43010.1
AT2G43010.3
AT2G43010.4
phytochrome interacting factor 4
Chr4_+_14579563 0.45 AT4G29780.1
nuclease
Chr5_+_21307016 0.45 AT5G52510.1
SCARECROW-like 8
Chr5_-_3793026 0.44 AT5G11770.1
NADH-ubiquinone oxidoreductase 20 kDa subunit
Chr4_-_17824748 0.44 AT4G37900.1
hypothetical protein (duplicated DUF1399)
Chr4_-_17148496 0.44 AT4G36240.1
GATA transcription factor 7
Chr1_-_20015038 0.44 AT1G53625.1
hypothetical protein
Chr2_-_9699915 0.44 AT2G22795.3
AT2G22795.2
AT2G22795.1
hypothetical protein
Chr5_-_15461459 0.43 AT5G38610.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_+_1952505 0.43 AT5G06390.1
FASCICLIN-like arabinogalactan protein 17 precursor
Chr5_+_1192917 0.43 AT5G04280.5
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
Chr3_-_8608297 0.43 AT3G23830.2
AT3G23830.1
glycine-rich RNA-binding protein 4
Chr3_+_2484454 0.43 AT3G07780.1
AT3G07780.3
AT3G07780.2
potyvirus VPg interacting protein (DUF1423)
Chr1_+_26830603 0.43 AT1G71170.1
6-phosphogluconate dehydrogenase family protein
Chr5_-_21607297 0.42 AT5G53270.1
Seed maturation protein
Chr1_-_1161982 0.42 AT1G04330.1
hypothetical protein
Chr2_-_6920319 0.42 AT2G15880.1
Leucine-rich repeat (LRR) family protein
Chr3_+_11278375 0.42 AT3G29370.1
hypothetical protein
Chr5_-_4423095 0.42 AT5G13700.1
polyamine oxidase 1
Chr1_+_23911024 0.42 AT1G64390.1
glycosyl hydrolase 9C2
Chr5_-_22560461 0.42 AT5G55730.2
AT5G55730.1
FASCICLIN-like arabinogalactan 1
Chr2_+_17886798 0.41 AT2G43010.5
phytochrome interacting factor 4
Chr2_-_9037782 0.41 AT2G21060.1
glycine-rich protein 2B
Chr4_+_7641378 0.41 AT4G13110.1
BSD domain-containing protein
Chr4_-_11850436 0.41 AT4G22490.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr4_+_15490566 0.41 AT4G32030.1
hypothetical protein
Chr2_+_17886427 0.40 AT2G43010.2
phytochrome interacting factor 4
Chr1_-_29278631 0.40 AT1G77855.1
BPS1-like protein
Chr4_-_3950602 0.40 AT4G06700.1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G44830

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0010198 synergid death(GO:0010198)
0.4 1.3 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.4 1.4 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.2 0.9 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.2 0.6 GO:0015840 urea transport(GO:0015840)
0.2 0.8 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.2 0.6 GO:0034486 vacuolar transmembrane transport(GO:0034486)
0.2 0.8 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.2 0.3 GO:0006571 tyrosine biosynthetic process(GO:0006571)
0.2 0.7 GO:0010500 transmitting tissue development(GO:0010500) carpel formation(GO:0048462)
0.2 0.5 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.1 0.4 GO:0046740 transport of virus in host, cell to cell(GO:0046740) multi-organism intercellular transport(GO:1902586)
0.1 0.9 GO:0019408 dolichol biosynthetic process(GO:0019408)
0.1 1.8 GO:0009554 megasporogenesis(GO:0009554)
0.1 0.5 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.6 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.1 2.6 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.1 0.3 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.6 GO:0005980 glycogen catabolic process(GO:0005980)
0.1 1.8 GO:0006030 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 2.3 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.1 0.3 GO:0046085 adenosine metabolic process(GO:0046085)
0.1 0.4 GO:0010507 negative regulation of autophagy(GO:0010507)
0.1 0.3 GO:0044380 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.1 0.3 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 0.3 GO:0034963 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.1 0.4 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.1 1.1 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 1.5 GO:0006949 syncytium formation(GO:0006949)
0.1 1.1 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.1 0.6 GO:0031118 rRNA pseudouridine synthesis(GO:0031118)
0.1 0.9 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.1 0.3 GO:0046208 spermine catabolic process(GO:0046208)
0.1 0.3 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.1 0.3 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.1 0.2 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.1 0.2 GO:0010253 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.1 2.5 GO:0009809 lignin biosynthetic process(GO:0009809)
0.1 0.2 GO:0000256 allantoin catabolic process(GO:0000256)
0.1 0.2 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.0 0.2 GO:0071323 cellular response to chitin(GO:0071323)
0.0 1.4 GO:0042026 protein refolding(GO:0042026)
0.0 0.5 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.0 6.1 GO:0010200 response to chitin(GO:0010200)
0.0 0.2 GO:1900363 regulation of mRNA polyadenylation(GO:1900363)
0.0 0.4 GO:0006071 glycerol metabolic process(GO:0006071)
0.0 0.1 GO:0051298 centrosome cycle(GO:0007098) centriole replication(GO:0007099) centrosome organization(GO:0051297) centrosome duplication(GO:0051298) centriole assembly(GO:0098534)
0.0 1.2 GO:0032508 DNA duplex unwinding(GO:0032508)
0.0 0.7 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 1.0 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 0.2 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.0 0.7 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 7.2 GO:0071456 cellular response to hypoxia(GO:0071456)
0.0 0.3 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.6 GO:0032776 regulation of chromatin silencing(GO:0031935) DNA methylation on cytosine(GO:0032776)
0.0 0.4 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.0 1.1 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.1 GO:0070509 calcium ion import(GO:0070509)
0.0 0.3 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.4 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.9 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.1 GO:0009413 response to flooding(GO:0009413)
0.0 0.2 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.0 0.4 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.4 GO:0032981 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 2.1 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.4 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.3 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.0 0.3 GO:0046620 regulation of organ growth(GO:0046620)
0.0 0.1 GO:0000914 assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) phragmoplast assembly(GO:0000914) phragmoplast microtubule organization(GO:0080175) assembly of actomyosin apparatus involved in mitotic cytokinesis(GO:1902407)
0.0 0.2 GO:0070370 cellular heat acclimation(GO:0070370)
0.0 0.1 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.0 0.2 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.1 GO:0048439 flower morphogenesis(GO:0048439)
0.0 0.2 GO:0055070 copper ion homeostasis(GO:0055070)
0.0 0.5 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.3 GO:0015770 sucrose transport(GO:0015770)
0.0 0.4 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.0 0.1 GO:0048451 petal formation(GO:0048451)
0.0 0.2 GO:0032261 purine nucleotide salvage(GO:0032261) purine-containing compound salvage(GO:0043101)
0.0 0.1 GO:0019419 sulfate reduction(GO:0019419)
0.0 0.2 GO:0010274 hydrotropism(GO:0010274)
0.0 0.3 GO:0048768 root hair cell tip growth(GO:0048768)
0.0 0.7 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.1 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.0 0.1 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.1 GO:0030002 cellular anion homeostasis(GO:0030002)
0.0 0.4 GO:0060548 negative regulation of cell death(GO:0060548)
0.0 0.2 GO:1902074 response to salt(GO:1902074)
0.0 0.2 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.7 GO:0007267 cell-cell signaling(GO:0007267)
0.0 0.7 GO:0010224 response to UV-B(GO:0010224)
0.0 0.2 GO:0000373 Group II intron splicing(GO:0000373)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.3 GO:0016363 nuclear matrix(GO:0016363)
0.2 0.5 GO:0009514 glyoxysome(GO:0009514)
0.1 0.6 GO:0072588 box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588)
0.1 0.3 GO:0035371 microtubule plus-end(GO:0035371)
0.1 1.2 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 0.5 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.1 0.4 GO:0031931 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.1 0.2 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 0.4 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.3 GO:0000796 condensin complex(GO:0000796)
0.0 0.1 GO:0005814 centrosome(GO:0005813) centriole(GO:0005814)
0.0 11.9 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.1 GO:0034702 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.1 GO:0045178 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 0.9 GO:0005762 mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.2 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.5 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.3 GO:0035618 endocytic vesicle(GO:0030139) root hair(GO:0035618)
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.1 GO:0005828 kinetochore microtubule(GO:0005828)
0.0 0.3 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.2 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.1 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.2 GO:0017119 Golgi transport complex(GO:0017119)
0.0 2.0 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 0.4 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.9 GO:0090406 pollen tube(GO:0090406)
0.0 0.2 GO:0031970 organelle envelope lumen(GO:0031970)
0.0 2.2 GO:0009505 plant-type cell wall(GO:0009505)
0.0 1.4 GO:0033646 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.1 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.4 2.0 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.3 0.8 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.2 1.0 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.2 1.5 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.2 0.6 GO:0008519 ammonium transmembrane transporter activity(GO:0008519) urea transmembrane transporter activity(GO:0015204)
0.2 0.8 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.2 0.9 GO:0004001 adenosine kinase activity(GO:0004001)
0.2 0.5 GO:0045430 chalcone isomerase activity(GO:0045430)
0.2 0.6 GO:0034513 box H/ACA snoRNA binding(GO:0034513)
0.2 0.5 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.2 0.6 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.1 0.6 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.1 0.4 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.1 0.9 GO:0045547 dehydrodolichyl diphosphate synthase activity(GO:0045547)
0.1 0.5 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.6 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.1 0.6 GO:0015116 sulfate transmembrane transporter activity(GO:0015116)
0.1 0.5 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 2.3 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 0.3 GO:0051010 microtubule plus-end binding(GO:0051010)
0.1 0.3 GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901)
0.1 1.3 GO:0002020 protease binding(GO:0002020)
0.1 0.5 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.1 1.2 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.1 0.3 GO:0070182 DNA polymerase binding(GO:0070182)
0.1 0.3 GO:0036009 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.1 0.3 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.1 1.8 GO:0004568 chitinase activity(GO:0004568)
0.1 0.3 GO:0004737 pyruvate decarboxylase activity(GO:0004737)
0.1 1.0 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.1 0.3 GO:0016882 cyclo-ligase activity(GO:0016882)
0.1 0.3 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.1 0.2 GO:0008061 chitin binding(GO:0008061)
0.1 0.5 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.1 0.2 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 0.8 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.1 1.2 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1 0.2 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.1 0.6 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.0 0.2 GO:0034511 U3 snoRNA binding(GO:0034511)
0.0 0.2 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.0 0.4 GO:0048038 quinone binding(GO:0048038)
0.0 0.1 GO:0015292 uniporter activity(GO:0015292)
0.0 0.4 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.5 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 1.0 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 1.0 GO:0008810 cellulase activity(GO:0008810)
0.0 0.2 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.2 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.3 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.4 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.2 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0 0.5 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.1 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 0.2 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.2 GO:0080025 phosphatidylinositol-3,5-bisphosphate binding(GO:0080025)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 1.6 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.3 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.1 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity(GO:0010295)
0.0 0.4 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 0.5 GO:0000146 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.6 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 2.4 GO:0009055 electron carrier activity(GO:0009055)
0.0 0.4 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003) ATP-dependent helicase activity(GO:0008026) single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) purine NTP-dependent helicase activity(GO:0070035)
0.0 0.9 GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
0.0 0.1 GO:0005254 voltage-gated chloride channel activity(GO:0005247) chloride channel activity(GO:0005254)
0.0 0.2 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.5 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.4 GO:0005179 hormone activity(GO:0005179)
0.0 0.8 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 1.1 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 0.0 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.1 GO:1902936 phosphatidylinositol bisphosphate binding(GO:1902936)
0.0 0.2 GO:0019239 deaminase activity(GO:0019239)
0.0 0.6 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.8 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.3 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation