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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G43700
Z-value: 1.13
Transcription factors associated with AT1G43700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G43700
|
AT1G43700 | VIRE2-interacting protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VIP1 | arTal_v1_Chr1_+_16484231_16484231 | -0.75 | 1.8e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.87 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.44 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.39 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_6414488_6414488 Show fit | 1.31 |
AT5G19120.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr2_-_19019255_19019364 Show fit | 1.29 |
AT2G46330.2
AT2G46330.1 |
arabinogalactan protein 16 |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 1.27 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_3857780_3857780 Show fit | 1.26 |
AT3G12110.1
|
actin-11 |
|
| arTal_v1_Chr3_+_16896166_16896166 Show fit | 1.24 |
AT3G45970.2
AT3G45970.1 |
expansin-like A1 |
|
| arTal_v1_Chr1_-_983544_983544 Show fit | 1.24 |
AT1G03870.1
|
FASCICLIN-like arabinoogalactan 9 |
|
| arTal_v1_Chr4_+_9759203_9759203 Show fit | 1.22 |
AT4G17500.1
|
ethylene responsive element binding factor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G43700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 3.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 3.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.1 | 2.1 | GO:0006857 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
| 0.1 | 1.9 | GO:0009750 | response to fructose(GO:0009750) |
| 0.0 | 1.7 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.0 | 1.6 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.0 | 1.6 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 1.5 | GO:0042335 | cuticle development(GO:0042335) |
| 0.0 | 1.4 | GO:0008283 | cell proliferation(GO:0008283) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 5.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.8 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.1 | 1.6 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
| 0.1 | 1.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 1.1 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 0.8 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
| 0.1 | 0.8 | GO:0034045 | pre-autophagosomal structure membrane(GO:0034045) |
| 0.2 | 0.7 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.0 | 0.6 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.9 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 1.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 1.6 | GO:0016251 | obsolete general RNA polymerase II transcription factor activity(GO:0016251) |
| 0.0 | 1.6 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.1 | 1.3 | GO:0050373 | UDP-arabinose 4-epimerase activity(GO:0050373) |
| 0.0 | 1.3 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 1.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.2 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.3 | 1.1 | GO:0016165 | linoleate 13S-lipoxygenase activity(GO:0016165) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.1 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.3 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.0 | 0.1 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.3 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.0 | 0.0 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |