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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G43160
Z-value: 0.94
Transcription factors associated with AT1G43160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G43160
|
AT1G43160 | related to AP2 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.6 | arTal_v1_Chr1_+_16263805_16263805 | -0.10 | 7.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_7496292_7496292 Show fit | 1.09 |
AT2G17230.1
|
EXORDIUM like 5 |
|
| arTal_v1_Chr1_-_4855287_4855287 Show fit | 1.07 |
AT1G14200.1
|
RING/U-box superfamily protein |
|
| arTal_v1_Chr1_+_6927736_6927736 Show fit | 1.04 |
AT1G19960.1
|
transcription factor |
|
| arTal_v1_Chr3_+_6840281_6840281 Show fit | 0.94 |
AT3G19680.1
|
hypothetical protein (DUF1005) |
|
| arTal_v1_Chr4_-_9331646_9331646 Show fit | 0.81 |
AT4G16563.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_1994824_1994961 Show fit | 0.79 |
AT5G06530.2
AT5G06530.3 AT5G06530.4 AT5G06530.1 |
ABC-2 type transporter family protein |
|
| arTal_v1_Chr3_-_8268961_8268961 Show fit | 0.78 |
AT3G23170.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 0.74 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
|
| arTal_v1_Chr4_+_12310619_12310619 Show fit | 0.72 |
AT4G23600.3
|
Tyrosine transaminase family protein |
|
| arTal_v1_Chr1_-_18430497_18430497 Show fit | 0.72 |
AT1G49780.1
|
plant U-box 26 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G43160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0009814 | defense response, incompatible interaction(GO:0009814) |
| 0.2 | 2.1 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.0 | 1.8 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.2 | 1.5 | GO:0046247 | carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247) |
| 0.2 | 1.3 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 1.3 | GO:0010029 | regulation of seed germination(GO:0010029) |
| 0.0 | 1.2 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 1.0 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
| 0.0 | 0.9 | GO:0048829 | root cap development(GO:0048829) |
| 0.2 | 0.8 | GO:0010500 | transmitting tissue development(GO:0010500) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 1.1 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.2 | 1.0 | GO:0070505 | pollen coat(GO:0070505) |
| 0.1 | 0.6 | GO:0000813 | ESCRT I complex(GO:0000813) |
| 0.1 | 0.5 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 0.5 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.4 | GO:0000812 | Swr1 complex(GO:0000812) |
| 0.1 | 0.3 | GO:0031907 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
| 0.0 | 0.3 | GO:0030893 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
| 0.0 | 0.3 | GO:0005880 | nuclear microtubule(GO:0005880) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.1 | GO:0004121 | cystathionine beta-lyase activity(GO:0004121) |
| 0.0 | 2.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 1.6 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 1.5 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
| 0.0 | 1.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.3 | 1.3 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 0.9 | GO:0010328 | auxin influx transmembrane transporter activity(GO:0010328) |
| 0.1 | 0.8 | GO:0001872 | (1->3)-beta-D-glucan binding(GO:0001872) |
| 0.1 | 0.6 | GO:0019158 | glucose binding(GO:0005536) mannokinase activity(GO:0019158) |
| 0.0 | 0.6 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 0.1 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.5 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.2 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |