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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G36060

Z-value: 0.85

Transcription factors associated with AT1G36060

Gene Symbol Gene ID Gene Info
AT1G36060
AT1G36060 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G36060arTal_v1_Chr1_-_13456336_134563360.421.3e-01Click!

Activity profile of AT1G36060 motif

Sorted Z-values of AT1G36060 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_20354351 1.47 AT3G54940.3
AT3G54940.2
AT3G54940
Papain family cysteine protease
Chr1_-_9956960 1.05 AT1G28370.1
AT1G28370.2
ERF11
ERF domain protein 11
Chr4_+_7758275 1.02 AT4G13340.1
LRX3
Leucine-rich repeat (LRR) family protein
Chr1_-_8559066 1.01 AT1G24170.1
LGT9
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_-_8064649 0.89 AT3G22800.1
AT3G22800
Leucine-rich repeat (LRR) family protein
Chr5_+_16202142 0.84 AT5G40460.1
AT5G40460
cyclin-dependent kinase inhibitor SMR3-like protein
Chr2_+_10072057 0.78 AT2G23690.1
AT2G23690
HTH-type transcriptional regulator
Chr4_+_160643 0.78 AT4G00360.1
CYP86A2
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr5_-_17831336 0.77 AT5G44260.1
AT5G44260
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr4_-_16168711 0.75 AT4G33660.1
AT4G33660
cysteine-rich TM module stress tolerance protein
Chr4_-_14439723 0.74 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr3_-_9723904 0.72 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr4_+_15382777 0.68 AT4G31800.1
WRKY18
WRKY DNA-binding protein 18
Chr4_-_9331646 0.68 AT4G16563.1
AT4G16563
Eukaryotic aspartyl protease family protein
Chr4_+_15383197 0.67 AT4G31800.3
WRKY18
WRKY DNA-binding protein 18
Chr1_-_7040231 0.66 AT1G20330.1
SMT2
sterol methyltransferase 2
Chr1_+_7886323 0.63 AT1G22330.1
AT1G22330
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_5471735 0.63 AT3G16150.1
ASPGB1
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Chr3_-_6931825 0.62 AT3G19920.2
AT3G19920.1
AT3G19920
BTB/POZ domain protein
Chr5_-_22358381 0.61 AT5G55090.1
AT5G55090.2
MAPKKK15
mitogen-activated protein kinase kinase kinase 15
Chr5_-_19635664 0.60 AT5G48450.1
AT5G48450.2
sks3
SKU5 similar 3
Chr2_-_13864596 0.59 AT2G32690.2
AT2G32690.3
AT2G32690.5
AT2G32690.4
AT2G32690.1
GRP23
glycine-rich protein 23
Chr2_-_12188293 0.54 AT2G28500.1
LBD11
LOB domain-containing protein 11
Chr3_-_6491429 0.53 AT3G18830.1
PMT5
polyol/monosaccharide transporter 5
Chr5_+_4087689 0.52 AT5G12940.1
AT5G12940
Leucine-rich repeat (LRR) family protein
Chr5_+_17731005 0.51 AT5G44060.1
AT5G44060
embryo sac development arrest protein
Chr2_+_2055519 0.50 AT2G05580.1
AT2G05580
Glycine-rich protein family
Chr3_+_2717557 0.50 AT3G08940.2
AT3G08940.1
LHCB4.2
light harvesting complex photosystem II
Chr5_+_26854022 0.50 AT5G67300.1
MYBR1
myb domain protein r1
Chr4_-_82040 0.48 AT4G00190.1
PME38
pectin methylesterase 38
Chr3_-_6430517 0.47 AT3G18690.1
MKS1
MAP kinase substrate 1
Chr5_-_3027114 0.47 AT5G09750.1
HEC3
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_16806830 0.47 AT4G35320.1
AT4G35320
hypothetical protein
Chr1_-_26768215 0.47 AT1G70990.1
AT1G70990
proline-rich family protein
Chr3_+_8558060 0.47 AT3G23750.1
AT3G23750
Leucine-rich repeat protein kinase family protein
Chr3_-_7315883 0.46 AT3G20880.1
WIP4
WIP domain protein 4
Chr4_+_15383633 0.46 AT4G31800.2
WRKY18
WRKY DNA-binding protein 18
Chr5_-_8419076 0.46 AT5G24590.2
TIP
TCV-interacting protein
Chr5_-_1580875 0.45 AT5G05340.1
PRX52
Peroxidase superfamily protein
Chr1_+_1086170 0.44 AT1G04160.2
AT1G04160.1
XIB
myosin XI B
Chr5_-_1214439 0.44 AT5G04330.1
CYP84A4
Cytochrome P450 superfamily protein
Chr3_+_11278375 0.44 AT3G29370.1
P1R3
hypothetical protein
Chr3_-_18594715 0.43 AT3G50140.1
AT3G50140.2
AT3G50140
transmembrane protein, putative (DUF247)
Chr4_-_18098633 0.42 AT4G38770.1
PRP4
proline-rich protein 4
Chr4_-_14619573 0.42 AT4G29900.2
AT4G29900.1
ACA10
autoinhibited Ca(2+)-ATPase 10
Chr5_-_489242 0.42 AT5G02330.1
AT5G02330
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_11968712 0.42 AT2G28085.1
AT2G28085
SAUR-like auxin-responsive protein family
Chr5_-_26096114 0.41 AT5G65300.1
AT5G65300
hypothetical protein
Chr5_-_1894124 0.41 AT5G06250.2
AT5G06250.1
AT5G06250.3
AT5G06250.4
AT5G06250.5
DPA4
AP2/B3-like transcriptional factor family protein
Chr4_+_14685602 0.41 AT4G30040.1
AT4G30040
Eukaryotic aspartyl protease family protein
Chr2_+_6399621 0.40 AT2G14890.2
AGP9
arabinogalactan protein 9
Chr4_+_17954710 0.40 AT4G38340.1
AT4G38340
Plant regulator RWP-RK family protein
Chr4_+_17955110 0.40 AT4G38340.2
AT4G38340
Plant regulator RWP-RK family protein
Chr3_-_23178294 0.40 AT3G62670.1
RR20
two-component response regulator
Chr2_+_6399405 0.40 AT2G14890.1
AGP9
arabinogalactan protein 9
Chr5_-_3876990 0.40 AT5G12000.2
AT5G12000.1
AT5G12000
kinase with adenine nucleotide alpha hydrolases-like domain-containing protein
Chr2_-_11777529 0.39 AT2G27580.2
AT2G27580.1
AT2G27580
A20/AN1-like zinc finger family protein
Chr3_-_11919546 0.39 AT3G30290.1
CYP702A8
cytochrome P450, family 702, subfamily A, polypeptide 8
Chr1_-_24683986 0.39 AT1G66235.1
AT1G66235.2
AT1G66235
no-apical-meristem-associated carboxy-terminal domain protein
Chr2_+_15158561 0.38 AT2G36090.1
AT2G36090
F-box family protein
Chr5_-_15987339 0.38 AT5G39930.1
CLPS5
CLP1-similar protein 5
Chr4_+_14304921 0.38 AT4G29020.2
AT4G29020.1
AT4G29020
glycine-rich protein
Chr2_+_9937792 0.37 AT2G23340.1
DEAR3
DREB and EAR motif protein 3
Chr1_+_23685093 0.37 AT1G63830.3
AT1G63830.4
AT1G63830.1
AT1G63830
PLAC8 family protein
Chr5_+_17810477 0.37 AT5G44220.1
AT5G44220
F-box family protein
Chr1_+_26938369 0.37 AT1G71520.1
AT1G71520
Integrase-type DNA-binding superfamily protein
Chr1_-_5645443 0.37 AT1G16510.1
AT1G16510
SAUR-like auxin-responsive protein family
Chr2_+_19641351 0.37 AT2G48010.1
RKF3
receptor-like kinase in in flowers 3
Chr1_+_23685300 0.37 AT1G63830.2
AT1G63830
PLAC8 family protein
Chr1_-_5153104 0.36 AT1G14930.1
AT1G14930
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr4_-_12276322 0.36 AT4G23520.1
AT4G23520
Cysteine proteinases superfamily protein
Chr3_+_3504204 0.36 AT3G11180.2
AT3G11180
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_23685721 0.35 AT1G63830.5
AT1G63830
PLAC8 family protein
Chr3_+_3503917 0.35 AT3G11180.1
AT3G11180
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr2_+_13571044 0.35 AT2G31910.1
CHX21
cation/H+ exchanger 21
Chr1_-_13125263 0.35 AT1G35580.3
AT1G35580.1
AT1G35580.2
CINV1
cytosolic invertase 1
Chr3_+_18397725 0.35 AT3G49630.1
AT3G49630.2
AT3G49630.3
AT3G49630
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_9471039 0.35 AT3G25882.1
NIMIN-2
NIM1-interacting 2
Chr5_-_3044546 0.34 AT5G09800.1
AT5G09800
ARM repeat superfamily protein
Chr4_+_15700829 0.34 AT4G32540.1
AT4G32540.2
YUC1
Flavin-binding monooxygenase family protein
Chr2_+_12709721 0.34 AT2G29750.1
UGT71C1
UDP-glucosyl transferase 71C1
Chr3_+_10505711 0.34 AT3G28180.1
CSLC04
Cellulose-synthase-like C4
Chr5_+_1378954 0.34 AT5G04770.3
CAT6
cationic amino acid transporter 6
Chr2_+_8985959 0.33 AT2G20880.1
ERF53
Integrase-type DNA-binding superfamily protein
Chr1_+_19812087 0.33 AT1G53163.1
AT1G53163
membrane-associated kinase regulator
Chr2_+_12638284 0.33 AT2G29525.1
AT2G29525.3
AT2G29525.5
AT2G29525.4
AT2G29525.2
AtIPCS3
Inositol phosphorylceramide synthase 3
Chr5_+_4591690 0.33 AT5G14230.1
AT5G14230
ankyrin
Chr1_+_8678858 0.33 AT1G24485.4
AT1G24485.2
AT1G24485.1
AT1G24485.3
AT1G24485
ER protein carbohydrate-binding protein
Chr5_+_1378788 0.33 AT5G04770.2
CAT6
cationic amino acid transporter 6
Chr5_+_1378621 0.33 AT5G04770.1
CAT6
cationic amino acid transporter 6
Chr1_-_27640643 0.32 AT1G73500.1
MKK9
MAP kinase kinase 9
Chr1_+_25657757 0.32 AT1G68440.1
AT1G68440
transmembrane protein
Chr2_+_8093220 0.32 AT2G18670.1
AT2G18670
RING/U-box superfamily protein
Chr1_+_28750872 0.32 AT1G76610.1
AT1G76610
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr2_+_17886427 0.32 AT2G43010.2
PIF4
phytochrome interacting factor 4
Chr5_+_338896 0.32 AT5G01880.1
AT5G01880
RING/U-box superfamily protein
Chr2_+_13570406 0.32 AT2G31910.3
CHX21
cation/H+ exchanger 21
Chr3_+_4995941 0.32 AT3G14850.1
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr5_-_13853742 0.31 AT5G35660.1
AT5G35660
Glycine-rich protein family
Chr3_-_10363607 0.31 AT3G27920.1
MYB0
myb domain protein 0
Chr1_+_20481648 0.31 AT1G54940.1
PGSIP4
plant glycogenin-like starch initiation protein 4
Chr1_+_11094407 0.31 AT1G31090.1
AT1G31090
F-box family protein
Chr2_+_17886101 0.31 AT2G43010.1
AT2G43010.3
AT2G43010.4
PIF4
phytochrome interacting factor 4
Chr2_+_1025 0.31 AT2G01008.1
AT2G01008
maternal effect embryo arrest protein
Chr2_+_7275657 0.31 AT2G16760.1
AT2G16760
Calcium-dependent phosphotriesterase superfamily protein
Chr5_+_21048191 0.31 AT5G51800.1
AT5G51800
Protein kinase superfamily protein
Chr3_-_17968590 0.30 AT3G48510.1
AT3G48510
AtIII18x5-like protein
Chr2_+_13570107 0.30 AT2G31910.2
CHX21
cation/H+ exchanger 21
Chr1_+_5389952 0.30 AT1G15670.1
AT1G15670
Galactose oxidase/kelch repeat superfamily protein
Chr4_+_18539511 0.30 AT4G39980.1
DHS1
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1
Chr2_+_9428743 0.30 AT2G22180.1
AT2G22180
hydroxyproline-rich glycoprotein family protein
Chr5_-_26810116 0.30 AT5G67190.1
DEAR2
DREB and EAR motif protein 2
Chr1_-_18758708 0.30 AT1G50640.1
ERF3
ethylene responsive element binding factor 3
Chr1_+_2414143 0.30 AT1G07795.1
AT1G07795
forkhead box protein G1
Chr1_+_20311619 0.30 AT1G54420.1
AT1G54420
hypothetical protein
Chr4_+_18443679 0.29 AT4G39760.1
AT4G39760
Galactose oxidase/kelch repeat superfamily protein
Chr3_-_7501888 0.29 AT3G21320.1
AT3G21320
EARLY FLOWERING protein
Chr3_+_4995426 0.29 AT3G14850.2
TBL41
TRICHOME BIREFRINGENCE-LIKE 41
Chr2_-_342480 0.29 AT2G01790.1
AT2G01790
TRAF-like family protein
Chr4_-_4719661 0.29 AT4G07915.1
AT4G07915

Chr1_-_9968301 0.29 AT1G28390.2
AT1G28390
Protein kinase superfamily protein
Chr3_+_19945571 0.29 AT3G53840.1
AT3G53840
Protein kinase superfamily protein
Chr2_+_18479053 0.29 AT2G44810.1
DAD1
alpha/beta-Hydrolases superfamily protein
Chr1_-_20983979 0.28 AT1G56100.1
AT1G56100.3
AT1G56100.2
AT1G56100
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_+_17697686 0.28 AT5G43990.5
SUVR2
SET-domain containing protein lysine methyltransferase family protein
Chr4_-_13964229 0.28 AT4G28090.1
sks10
SKU5 similar 10
Chr2_+_18478374 0.28 AT2G44810.2
DAD1
alpha/beta-Hydrolases superfamily protein
Chr1_-_11200141 0.28 AT1G31310.1
AT1G31310
hydroxyproline-rich glycoprotein family protein
Chr2_+_17886798 0.28 AT2G43010.5
PIF4
phytochrome interacting factor 4
Chr1_+_23333619 0.28 AT1G62981.1
AT1G62981.2
AT1G62981.3
AT1G62981
transmembrane protein, putative (DUF1191)
Chr5_+_17076227 0.28 AT5G42635.1
AT5G42635
glycine-rich protein
Chr5_+_2530834 0.28 AT5G07930.3
AT5G07930.1
AT5G07930.2
MCT2
MEI2 C-terminal RRM only like 2
Chr4_-_7174439 0.28 AT4G11950.1
AT4G11950
transmembrane protein, putative (DUF1191)
Chr1_-_9968495 0.28 AT1G28390.1
AT1G28390
Protein kinase superfamily protein
Chr4_+_16829326 0.28 AT4G35390.1
AGF1
AT-hook protein of GA feedback 1
Chr2_+_9917443 0.28 AT2G23310.1
AT2G23310.2
ATRER1C1
Rer1 family protein
Chr2_+_114926 0.27 AT2G01190.1
PDE331
Octicosapeptide/Phox/Bem1p family protein
Chr1_+_7169309 0.27 AT1G20680.2
AT1G20680.1
AT1G20680
transport/golgi organization-like protein (DUF833)
Chr1_-_23542198 0.27 AT1G63480.6
AT1G63480.7
AT1G63480.4
AT1G63480.5
AT1G63480.3
AT1G63480.1
AT1G63480.2
AT1G63480
AT hook motif DNA-binding family protein
Chr5_-_24687366 0.27 AT5G61412.1
AT5G61412
hypothetical protein
Chr1_-_9406369 0.27 AT1G27090.1
AT1G27090
glycine-rich protein
Chr1_-_23117594 0.27 AT1G62450.1
AT1G62450
Immunoglobulin E-set superfamily protein
Chr5_+_17964416 0.27 AT5G44570.3
AT5G44570.1
AT5G44570.2
AT5G44570
transmembrane protein
Chr4_+_17228773 0.27 AT4G36510.1
AT4G36510
hypothetical protein
Chr1_+_3554104 0.27 AT1G10700.2
AT1G10700.1
PRS3
phosphoribosyl pyrophosphate (PRPP) synthase 3
Chr5_+_1982444 0.26 AT5G06500.1
AGL96
AGAMOUS-like 96
Chr5_+_13358370 0.26 AT5G35090.1
AT5G35090
hypothetical protein
Chr4_+_14418556 0.26 AT4G29240.1
AT4G29240.2
AT4G29240
Leucine-rich repeat (LRR) family protein
Chr5_+_58011 0.26 AT5G01170.1
AT5G01170
hypothetical protein (DUF740)
Chr5_-_17395148 0.26 AT5G43340.1
PHT1%3B6
phosphate transporter 1;6
Chr3_-_18834834 0.26 AT3G50685.1
AT3G50685
anti-muellerian hormone type-2 receptor
Chr3_-_10587759 0.26 AT3G28330.1
AT3G28330
F-box family protein-like protein
Chr1_-_17091464 0.26 AT1G45163.1
AT1G45163
transmembrane protein
Chr2_-_5881534 0.26 AT2G13990.1
AT2G13990

Chr1_+_11953089 0.26 AT1G32975.1
AT1G32975
hypothetical protein
Chr1_-_21553266 0.26 AT1G58200.2
MSL3
MSCS-like 3
Chr5_+_20683262 0.25 AT5G50830.1
AT5G50830.2
AT5G50830
nuclear polyadenylated RNA-binding protein
Chr1_+_6061895 0.25 AT1G17620.1
AT1G17620
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr3_-_22933362 0.25 AT3G61920.1
AT3G61920
UvrABC system protein C
Chr3_-_6562301 0.25 AT3G19020.2
AT3G19020.1
AT3G19020
Leucine-rich repeat (LRR) family protein
Chr3_-_12683179 0.25 AT3G31314.1
AT3G31314

Chr5_-_8423499 0.25 AT5G24600.2
AT5G24600.1
AT5G24600
TRP-like ion channel protein (Protein of unknown function, DUF599)
Chr3_+_21238223 0.25 AT3G57400.1
AT3G57400
transmembrane protein
Chr1_-_21553085 0.25 AT1G58200.1
MSL3
MSCS-like 3
Chr3_-_9169301 0.25 AT3G25180.1
AT3G25180.2
CYP82G1
cytochrome P450, family 82, subfamily G, polypeptide 1
Chr4_-_17175857 0.24 AT4G36350.1
PAP25
purple acid phosphatase 25
Chr2_-_10697175 0.24 AT2G25130.1
AT2G25130
ARM repeat superfamily protein
Chr5_+_4593198 0.24 AT5G14230.2
AT5G14230
ankyrin
Chr4_+_5940186 0.24 AT4G09360.1
AT4G09360
NB-ARC domain-containing disease resistance protein
Chr5_-_26749616 0.24 AT5G67010.1
AT5G67010
Integrase-type DNA-binding superfamily protein
Chr1_+_27279341 0.24 AT1G72460.1
AT1G72460
Leucine-rich repeat protein kinase family protein
Chr4_-_14592825 0.24 AT4G29800.2
PLP8
PATATIN-like protein 8
Chr4_+_9739518 0.24 AT4G17460.1
HAT1
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Chr3_+_19996177 0.23 AT3G54000.1
AT3G54000.2
AT3G54000
TIP41-like protein
Chr5_-_18690857 0.23 AT5G46080.1
AT5G46080
Protein kinase superfamily protein
Chr1_+_13707880 0.23 AT1G36395.1
AT1G36395

Chr1_+_17962810 0.23 AT1G48590.4
AT1G48590.3
AT1G48590.2
AT1G48590
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr4_-_18073182 0.23 AT4G38680.1
GRP2
glycine rich protein 2
Chr4_-_14592610 0.23 AT4G29800.1
PLP8
PATATIN-like protein 8
Chr5_+_1046981 0.23 AT5G03890.1
AT5G03890
hypothetical protein
Chr2_-_1800472 0.23 AT2G05070.1
LHCB2.2
photosystem II light harvesting complex protein 2.2
Chr5_-_14001416 0.23 AT5G35830.1
AT5G35830
Ankyrin repeat family protein
Chr1_-_24461738 0.22 AT1G65770.1
AMR1
ascorbic acid mannose pathway regulator 1
Chr2_+_13734945 0.22 AT2G32350.1
AT2G32350
Ubiquitin-like superfamily protein
Chr1_+_5448611 0.22 AT1G15830.1
AT1G15830.3
AT1G15830
hypothetical protein
Chr1_-_1301773 0.22 AT1G04660.1
AT1G04660
glycine-rich protein
Chr1_-_16814733 0.22 AT1G44191.1
AT1G44191
ECA1 gametogenesis related family protein
Chr5_+_3799408 0.22 AT5G11790.2
AT5G11790.1
NDL2
N-MYC downregulated-like 2
Chr1_+_10900681 0.22 AT1G30730.1
AT1G30730
FAD-binding Berberine family protein
Chr4_-_11278318 0.22 AT4G21140.1
AT4G21140
copper ion-binding protein
Chr4_-_9087454 0.22 AT4G16040.1
AT4G16040.2
AT4G16040
transmembrane protein
Chr2_+_15928591 0.22 AT2G38070.1
AT2G38070
LOW protein: UPF0503-like protein, putative (DUF740)
Chr1_-_27334771 0.22 AT1G72580.1
AT1G72580
hypothetical protein
Chr1_+_13528257 0.22 AT1G36150.1
AT1G36150
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_17962520 0.22 AT1G48590.1
AT1G48590
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_+_8523390 0.21 AT5G24820.1
AT5G24820
Eukaryotic aspartyl protease family protein
Chr4_+_9467512 0.21 AT4G16820.1
PLA-I%7Bbeta]2
alpha/beta-Hydrolases superfamily protein
Chr1_+_5451432 0.21 AT1G15840.1
AT1G15840
hypothetical protein
Chr3_+_19996533 0.21 AT3G54000.3
AT3G54000
TIP41-like protein
Chr4_-_1178489 0.21 AT4G02670.1
AT4G02670.2
IDD12
indeterminate(ID)-domain 12

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G36060

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.3 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.2 0.6 GO:0016540 protein autoprocessing(GO:0016540)
0.2 0.8 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.1 0.6 GO:0010500 transmitting tissue development(GO:0010500)
0.1 0.4 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.1 0.3 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.1 0.4 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.7 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.1 0.9 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.1 0.2 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.1 0.3 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.1 0.3 GO:0007266 Rho protein signal transduction(GO:0007266)
0.0 0.3 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.4 GO:0010358 leaf shaping(GO:0010358)
0.0 0.2 GO:1903428 photosynthesis, light harvesting in photosystem II(GO:0009769) positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.0 0.7 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.7 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.3 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 0.5 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.3 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 0.3 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.5 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.4 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)
0.0 0.3 GO:2000142 regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.2 GO:0051014 actin filament severing(GO:0051014)
0.0 0.3 GO:0010274 hydrotropism(GO:0010274)
0.0 0.3 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.3 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.5 GO:0043572 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.3 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.0 0.9 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.3 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.3 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 1.2 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 0.1 GO:0090030 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.4 GO:0099518 vesicle transport along actin filament(GO:0030050) vesicle cytoskeletal trafficking(GO:0099518)
0.0 0.1 GO:1990937 xylan acetylation(GO:1990937)
0.0 0.1 GO:0006723 cuticle hydrocarbon biosynthetic process(GO:0006723)
0.0 0.2 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.1 GO:0098795 production of lsiRNA involved in RNA interference(GO:0010599) mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.4 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.1 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.2 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.4 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.0 0.2 GO:0080188 RNA-directed DNA methylation(GO:0080188)
0.0 0.2 GO:0010229 inflorescence development(GO:0010229)
0.0 0.1 GO:0051320 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.1 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.1 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.2 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.2 GO:0006538 glutamate catabolic process(GO:0006538)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0043673 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.1 0.3 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 1.8 GO:0005764 lysosome(GO:0005764)
0.0 0.4 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.2 GO:0009517 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.2 GO:0005884 actin filament(GO:0005884)
0.0 0.4 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0008798 beta-aspartyl-peptidase activity(GO:0008798)
0.2 0.8 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.2 0.5 GO:0015146 pentose transmembrane transporter activity(GO:0015146)
0.1 0.6 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.1 0.3 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.1 0.3 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.1 1.9 GO:0005199 structural constituent of cell wall(GO:0005199)
0.1 0.3 GO:0005094 Rho GDP-dissociation inhibitor activity(GO:0005094)
0.1 0.3 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.1 0.4 GO:0051731 polynucleotide 5'-hydroxyl-kinase activity(GO:0051731)
0.1 0.3 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 0.9 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 1.0 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.9 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.3 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.7 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.2 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.0 1.0 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.3 GO:0019209 MAP kinase kinase activity(GO:0004708) kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295)
0.0 1.4 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.2 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.4 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.2 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 1.1 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.4 GO:0030898 microfilament motor activity(GO:0000146) actin-dependent ATPase activity(GO:0030898)
0.0 0.1 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.1 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.3 GO:0015020 glucuronosyltransferase activity(GO:0015020)
0.0 0.6 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.6 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.0 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.0 0.1 GO:0103075 indole-3-pyruvate monooxygenase activity(GO:0103075)
0.0 0.1 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.5 GO:0003713 transcription coactivator activity(GO:0003713)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.0 0.1 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing