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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G36060
Z-value: 0.85
Transcription factors associated with AT1G36060
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G36060
|
AT1G36060 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G36060 | arTal_v1_Chr1_-_13456336_13456336 | 0.42 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.47 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr1_-_9956960_9956980 Show fit | 1.05 |
AT1G28370.1
AT1G28370.2 |
ERF domain protein 11 |
|
| arTal_v1_Chr4_+_7758275_7758275 Show fit | 1.02 |
AT4G13340.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_-_8559066_8559066 Show fit | 1.01 |
AT1G24170.1
|
Nucleotide-diphospho-sugar transferases superfamily protein |
|
| arTal_v1_Chr3_-_8064649_8064649 Show fit | 0.89 |
AT3G22800.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr5_+_16202142_16202142 Show fit | 0.84 |
AT5G40460.1
|
cyclin-dependent kinase inhibitor SMR3-like protein |
|
| arTal_v1_Chr2_+_10072057_10072057 Show fit | 0.78 |
AT2G23690.1
|
HTH-type transcriptional regulator |
|
| arTal_v1_Chr4_+_160643_160643 Show fit | 0.78 |
AT4G00360.1
|
cytochrome P450, family 86, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr5_-_17831336_17831336 Show fit | 0.77 |
AT5G44260.1
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
|
| arTal_v1_Chr4_-_16168711_16168711 Show fit | 0.75 |
AT4G33660.1
|
cysteine-rich TM module stress tolerance protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G36060
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.3 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.0 | 1.2 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 0.9 | GO:0010244 | response to low fluence blue light stimulus by blue low-fluence system(GO:0010244) |
| 0.0 | 0.9 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 0.8 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.1 | 0.7 | GO:0032876 | negative regulation of DNA endoreduplication(GO:0032876) |
| 0.0 | 0.7 | GO:0006814 | sodium ion transport(GO:0006814) |
| 0.0 | 0.7 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.2 | 0.6 | GO:0016540 | protein autoprocessing(GO:0016540) |
| 0.1 | 0.6 | GO:0010500 | transmitting tissue development(GO:0010500) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 0.7 | GO:0043673 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 0.4 | GO:0005849 | mRNA cleavage factor complex(GO:0005849) |
| 0.0 | 0.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.3 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
| 0.0 | 0.2 | GO:0009517 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 0.2 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 0.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.9 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 1.1 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 1.0 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 1.0 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 0.9 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 0.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.2 | 0.8 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 0.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 0.6 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |