Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT1G35460
Z-value: 1.94
Transcription factors associated with AT1G35460
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G35460
|
AT1G35460 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FBH1 | arTal_v1_Chr1_+_13039660_13039660 | 0.50 | 7.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_21085245_21085245 Show fit | 1.35 |
AT3G56970.1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|
| arTal_v1_Chr4_-_7494234_7494234 Show fit | 1.14 |
AT4G12735.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_630748_630876 Show fit | 1.14 |
AT5G02780.1
AT5G02780.3 AT5G02780.2 |
glutathione transferase lambda 1 |
|
| arTal_v1_Chr5_+_22075277_22075277 Show fit | 1.08 |
AT5G54370.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
| arTal_v1_Chr2_-_12277417_12277417 Show fit | 0.99 |
AT2G28630.2
|
3-ketoacyl-CoA synthase 12 |
|
| arTal_v1_Chr3_-_5175523_5175523 Show fit | 0.96 |
AT3G15356.1
|
Legume lectin family protein |
|
| arTal_v1_Chr2_-_12277245_12277245 Show fit | 0.94 |
AT2G28630.1
|
3-ketoacyl-CoA synthase 12 |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 0.91 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr1_-_20019835_20019835 Show fit | 0.90 |
AT1G53635.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_8154710_8154710 Show fit | 0.89 |
AT5G24110.1
|
WRKY DNA-binding protein 30 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G35460
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.7 | GO:0006412 | translation(GO:0006412) |
| 0.3 | 3.5 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.1 | 2.4 | GO:0031348 | negative regulation of defense response(GO:0031348) |
| 0.0 | 2.2 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.1 | 2.1 | GO:0009641 | shade avoidance(GO:0009641) |
| 0.0 | 2.1 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.0 | 2.0 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
| 0.0 | 1.8 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.0 | 1.6 | GO:0080147 | root hair cell development(GO:0080147) |
| 0.3 | 1.5 | GO:0006809 | nitric oxide biosynthetic process(GO:0006809) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 60.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 8.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 6.2 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 5.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 2.9 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 2.6 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 2.4 | GO:0000323 | lytic vacuole(GO:0000323) |
| 0.0 | 2.2 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 2.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 5.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 4.8 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 4.0 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 3.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 2.5 | GO:0010329 | auxin efflux transmembrane transporter activity(GO:0010329) |
| 0.0 | 2.3 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 2.2 | GO:0044389 | ubiquitin-like protein ligase binding(GO:0044389) |
| 0.1 | 2.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 2.1 | GO:0003724 | RNA helicase activity(GO:0003724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 0.8 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.6 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.4 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 0.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.1 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.3 | 1.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.2 | 0.7 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 0.7 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.7 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.6 | REACTOME PKB MEDIATED EVENTS | Genes involved in PKB-mediated events |
| 0.2 | 0.6 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.1 | 0.6 | REACTOME SIGNALING BY NOTCH1 | Genes involved in Signaling by NOTCH1 |