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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G34670
Z-value: 1.93
Transcription factors associated with AT1G34670
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G34670
|
AT1G34670 | myb domain protein 93 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB93 | arTal_v1_Chr1_+_12709090_12709090 | 0.13 | 6.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 4.17 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 3.29 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 3.29 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 3.08 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_+_16770888_16770888 Show fit | 3.07 |
AT3G45680.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr3_-_197974_197974 Show fit | 3.05 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 3.03 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 3.03 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 3.02 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr4_-_18581696_18581696 Show fit | 2.70 |
AT4G40090.1
|
arabinogalactan protein 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G34670
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 12.1 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.3 | 8.0 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.2 | 5.0 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 1.2 | 4.6 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.9 | 4.6 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.4 | 4.2 | GO:0009423 | chorismate biosynthetic process(GO:0009423) |
| 0.2 | 4.0 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 3.9 | GO:0046688 | response to copper ion(GO:0046688) |
| 0.0 | 3.8 | GO:0010410 | hemicellulose metabolic process(GO:0010410) |
| 0.4 | 3.5 | GO:0006656 | phosphatidylcholine biosynthetic process(GO:0006656) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 41.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 19.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.4 | 15.1 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 6.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.3 | 3.7 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.2 | 3.2 | GO:0009986 | cell surface(GO:0009986) |
| 0.0 | 2.8 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.6 | 2.5 | GO:0010316 | pyrophosphate-dependent phosphofructokinase complex(GO:0010316) |
| 0.1 | 2.5 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 2.2 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 13.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.4 | 8.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 1.2 | 5.8 | GO:0008705 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.0 | 5.4 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.1 | 5.3 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.4 | 4.4 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 4.2 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 1.2 | 3.6 | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849) |
| 0.0 | 3.6 | GO:0004601 | peroxidase activity(GO:0004601) |
| 1.2 | 3.5 | GO:0000234 | phosphoethanolamine N-methyltransferase activity(GO:0000234) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 11.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 2.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.2 | 1.2 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.3 | 1.0 | PID MYC PATHWAY | C-MYC pathway |
| 0.2 | 0.9 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.7 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 12.1 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 1.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 0.9 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |