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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G34180
Z-value: 1.66
Transcription factors associated with AT1G34180
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G34180
|
AT1G34180 | NAC domain containing protein 16 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC016 | arTal_v1_Chr1_+_12448543_12448726 | -0.12 | 6.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.65 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.56 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 2.54 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 2.50 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 2.41 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 2.26 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.25 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 2.19 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.15 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.96 |
AT1G77520.1
|
O-methyltransferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G34180
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.6 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 7.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.4 | 5.5 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 1.2 | 4.9 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.2 | 4.5 | GO:0045493 | xylan catabolic process(GO:0045493) |
| 0.0 | 3.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 3.7 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.6 | 3.4 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.1 | 3.2 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.2 | 2.7 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 73.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 14.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 5.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.2 | GO:0005615 | extracellular space(GO:0005615) |
| 0.1 | 3.0 | GO:0045177 | apical part of cell(GO:0045177) |
| 0.3 | 2.9 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 2.8 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.2 | 2.3 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.1 | 2.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 2.0 | GO:0010319 | stromule(GO:0010319) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.7 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 5.6 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 5.4 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.2 | 5.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 4.8 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.3 | 4.7 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.0 | 4.7 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 3.9 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
| 0.2 | 3.8 | GO:0010427 | abscisic acid binding(GO:0010427) |
| 0.7 | 3.4 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.5 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.4 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.4 | 1.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 0.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.2 | 0.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.1 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.2 | 1.0 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.3 | 0.8 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.7 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.2 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.6 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.2 | 0.5 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.1 | 0.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.1 | 0.5 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |