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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G33240
Z-value: 0.96
Transcription factors associated with AT1G33240
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G33240
|
AT1G33240 | GT-2-like 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GTL1 | arTal_v1_Chr1_-_12054753_12054753 | -0.56 | 3.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 1.30 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 1.07 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.04 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 0.99 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 0.96 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 0.94 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr1_-_1248826_1248876 Show fit | 0.80 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 0.77 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 0.77 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 0.75 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G33240
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.2 | GO:0010187 | negative regulation of seed germination(GO:0010187) |
| 0.4 | 1.9 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.1 | 1.6 | GO:1902074 | response to salt(GO:1902074) |
| 0.1 | 1.6 | GO:0006075 | (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075) |
| 0.1 | 1.6 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.0 | 1.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 1.6 | GO:0043413 | protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413) |
| 0.1 | 1.3 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
| 0.1 | 1.2 | GO:0010158 | abaxial cell fate specification(GO:0010158) |
| 0.1 | 1.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 2.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 2.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 2.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.8 | GO:0009527 | plastid outer membrane(GO:0009527) |
| 0.1 | 1.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 1.6 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 1.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.3 | 1.0 | GO:0043235 | receptor complex(GO:0043235) |
| 0.3 | 1.0 | GO:0016328 | lateral plasma membrane(GO:0016328) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 2.5 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 2.5 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 2.1 | GO:0008514 | organic anion transmembrane transporter activity(GO:0008514) |
| 0.1 | 2.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 1.8 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.1 | 1.6 | GO:0003843 | 1,3-beta-D-glucan synthase activity(GO:0003843) |
| 0.1 | 1.3 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.1 | 1.0 | GO:0003999 | adenine phosphoribosyltransferase activity(GO:0003999) |
| 0.0 | 1.0 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.3 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.2 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.1 | 0.2 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.1 | PID S1P S1P1 PATHWAY | S1P1 pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.3 | 0.8 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.1 | 0.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.0 | 0.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 0.2 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.1 | 0.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |