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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G32870
Z-value: 2.90
Transcription factors associated with AT1G32870
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G32870
|
AT1G32870 | NAC domain protein 13 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC13 | arTal_v1_Chr1_+_11911631_11911679 | 0.05 | 8.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 5.67 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 5.33 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 4.86 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 4.65 |
AT3G24100.1
|
Uncharacterized protein family SERF |
|
| arTal_v1_Chr3_-_11195171_11195171 Show fit | 4.08 |
AT3G29250.3
|
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 3.90 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_16770888_16770888 Show fit | 3.84 |
AT3G45680.1
|
Major facilitator superfamily protein |
|
| arTal_v1_Chr5_+_20891163_20891163 Show fit | 3.80 |
AT5G51440.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 3.78 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr5_+_21603569_21603569 Show fit | 3.73 |
AT5G53250.1
|
arabinogalactan protein 22 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G32870
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 9.8 | GO:0009860 | pollen tube growth(GO:0009860) |
| 1.4 | 8.1 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.2 | 6.4 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 5.2 | GO:0010224 | response to UV-B(GO:0010224) |
| 0.0 | 5.1 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
| 0.4 | 4.1 | GO:0010196 | nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066) |
| 0.1 | 4.1 | GO:0085029 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.1 | 4.0 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.4 | 3.9 | GO:0010230 | alternative respiration(GO:0010230) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 61.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 19.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 7.5 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.3 | 4.6 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.5 | 4.3 | GO:0030076 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 4.1 | GO:0016021 | integral component of membrane(GO:0016021) |
| 0.2 | 3.9 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 3.5 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.9 | GO:0005615 | extracellular space(GO:0005615) extracellular region part(GO:0044421) |
| 0.0 | 2.9 | GO:0005802 | trans-Golgi network(GO:0005802) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 8.1 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 7.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.8 | 5.4 | GO:0050403 | trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502) |
| 0.2 | 5.4 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.4 | 5.3 | GO:0019209 | kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
| 0.1 | 5.3 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.6 | 5.2 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 5.0 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
| 0.2 | 4.8 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
| 0.9 | 4.6 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 3.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.4 | 1.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.6 | 1.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.6 | 1.7 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.2 | 1.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 1.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 1.0 | REACTOME DNA REPAIR | Genes involved in DNA Repair |
| 0.1 | 0.8 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.1 | 0.7 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.1 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.0 | 0.1 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |