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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G32770

Z-value: 0.64

Transcription factors associated with AT1G32770

Gene Symbol Gene ID Gene Info
AT1G32770
AT1G32770 NAC domain containing protein 12

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC012arTal_v1_Chr1_-_11867154_118671540.293.1e-01Click!

Activity profile of AT1G32770 motif

Sorted Z-values of AT1G32770 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_+_16810482 1.27 AT4G35350.2
AT4G35350.1
XCP1
xylem cysteine peptidase 1
Chr3_-_5778052 0.83 AT3G16920.2
CTL2
chitinase-like protein
Chr3_-_5777841 0.83 AT3G16920.1
CTL2
chitinase-like protein
Chr5_+_1153740 0.78 AT5G04200.1
MC9
metacaspase 9
Chr1_-_9293862 0.77 AT1G26820.1
RNS3
ribonuclease 3
Chr1_+_7252111 0.71 AT1G20850.1
XCP2
xylem cysteine peptidase 2
Chr2_-_12338836 0.63 AT2G28760.3
AT2G28760.1
AT2G28760.4
UXS6
UDP-XYL synthase 6
Chr5_-_23917873 0.47 AT5G59290.3
AT5G59290.2
UXS3
UDP-glucuronic acid decarboxylase 3
Chr5_-_23918266 0.46 AT5G59290.1
AT5G59290.4
UXS3
UDP-glucuronic acid decarboxylase 3
Chr2_+_13836117 0.34 AT2G32610.1
CSLB01
cellulose synthase-like B1
Chr2_-_12339217 0.32 AT2G28760.2
UXS6
UDP-XYL synthase 6
Chr1_+_18517586 0.29 AT1G50010.1
TUA2
tubulin alpha-2 chain
Chr2_+_6244772 0.27 AT2G14620.2
AT2G14620.3
AT2G14620.1
XTH10
xyloglucan endotransglucosylase/hydrolase 10
Chr1_-_6672777 0.27 AT1G19300.1
PARVUS
Nucleotide-diphospho-sugar transferases superfamily protein
Chr1_-_9531489 0.25 AT1G27440.1
GUT2
Exostosin family protein
Chr5_-_13238884 0.24 AT5G34940.2
GUS3
glucuronidase 3
Chr2_+_13840687 0.24 AT2G32620.2
AT2G32620.1
AT2G32620.3
CSLB02
cellulose synthase-like B
Chr1_+_8327066 0.23 AT1G23460.1
AT1G23460
Pectin lyase-like superfamily protein
Chr5_-_13238457 0.22 AT5G34940.1
GUS3
glucuronidase 3
Chr5_-_13237662 0.20 AT5G34940.4
GUS3
glucuronidase 3
Chr1_+_24677121 0.20 AT1G66230.1
MYB20
myb domain protein 20
Chr5_-_13238718 0.19 AT5G34940.3
GUS3
glucuronidase 3
Chr1_+_27601593 0.16 AT1G73410.1
AT1G73410.2
MYB54
myb domain protein 54
Chr5_-_25635789 0.16 AT5G64060.1
NAC103
NAC domain containing protein 103
Chr1_-_26568871 0.15 AT1G70500.1
AT1G70500
Pectin lyase-like superfamily protein
Chr1_-_5614020 0.13 AT1G16420.1
MC8
metacaspase 8
Chr1_-_23721774 0.08 AT1G63910.1
AtMYB103
myb domain protein 103
Chr4_+_14082660 0.08 AT4G28500.1
NAC073
NAC domain containing protein 73
Chr1_+_10010124 0.07 AT1G28470.1
NAC010
NAC domain containing protein 10
Chr1_+_8326747 0.07 AT1G23460.2
AT1G23460
Pectin lyase-like superfamily protein
Chr3_-_2578276 0.06 AT3G08500.1
MYB83
myb domain protein 83
Chr2_+_13841180 0.06 AT2G32620.4
CSLB02
cellulose synthase-like B
Chr1_+_23337167 0.05 AT1G62990.1
KNAT7
homeobox knotted-like protein
Chr5_-_4065075 0.03 AT5G12870.1
MYB46
myb domain protein 46
Chr4_+_7324756 0.03 AT4G12350.1
MYB42
myb domain protein 42
Chr1_-_11867154 0.02 AT1G32770.1
NAC012
NAC domain containing protein 12

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G32770

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 2.0 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.2 1.9 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.1 1.7 GO:0006030 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.4 GO:0010417 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 0.1 GO:0097468 cell death in response to oxidative stress(GO:0036473) programmed cell death in response to reactive oxygen species(GO:0097468)
0.0 0.2 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.0 0.1 GO:1900378 positive regulation of secondary metabolite biosynthetic process(GO:1900378)
0.0 0.6 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.0 GO:0005764 lysosome(GO:0005764)
0.0 0.3 GO:0045298 tubulin complex(GO:0045298)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.9 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.2 0.8 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 0.9 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 1.7 GO:0004568 chitinase activity(GO:0004568)
0.1 0.2 GO:0080116 1,4-beta-D-xylan synthase activity(GO:0047517) glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 2.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.6 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.8 GO:0008234 cysteine-type peptidase activity(GO:0008234)