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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G32150
Z-value: 1.19
Transcription factors associated with AT1G32150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G32150
|
AT1G32150 | basic region/leucine zipper transcription factor 68 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| bZIP68 | arTal_v1_Chr1_+_11565494_11565494 | -0.42 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 2.29 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 2.02 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_-_4835089_4835089 Show fit | 2.02 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.88 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.87 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 1.87 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.86 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.69 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr4_-_12333904_12333904 Show fit | 1.69 |
AT4G23670.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.67 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G32150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.2 | 6.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 3.9 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.9 | 3.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.3 | 2.7 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.5 | 2.6 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.1 | 2.5 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.1 | 2.5 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.2 | 2.4 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.1 | 2.4 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 6.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.1 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 3.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 3.6 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 2.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 2.4 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 2.0 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.7 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.7 | GO:0005615 | extracellular space(GO:0005615) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.9 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.5 | 3.8 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.3 | 3.7 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.3 | 3.7 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 3.1 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 3.0 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.5 | 2.8 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.1 | 2.7 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.5 | 2.6 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 2.5 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.0 | 0.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.1 | PID ATR PATHWAY | ATR signaling pathway |
| 0.0 | 0.1 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.0 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.0 | 0.0 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.6 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.1 | 0.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.0 | 0.4 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
| 0.1 | 0.3 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.0 | 0.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.0 | 0.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.1 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |