Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT1G31140
Z-value: 1.48
Transcription factors associated with AT1G31140
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G31140
|
AT1G31140 | GORDITA |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GOA | arTal_v1_Chr1_+_11117941_11117993 | -0.03 | 9.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 2.67 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 2.54 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 2.14 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 1.98 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 1.97 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 1.96 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.90 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 1.88 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr5_-_5692920_5692992 Show fit | 1.70 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_+_5211719_5211719 Show fit | 1.65 |
AT5G15970.1
|
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G31140
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.6 | GO:0006412 | translation(GO:0006412) |
| 1.0 | 6.1 | GO:0009413 | response to flooding(GO:0009413) |
| 0.1 | 5.4 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.9 | 5.3 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.1 | 5.1 | GO:0042254 | ribosome biogenesis(GO:0042254) |
| 0.1 | 5.0 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 4.2 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.1 | 4.1 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.1 | 3.9 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 3.6 | GO:0006413 | translational initiation(GO:0006413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 55.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 31.3 | GO:0009506 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 22.7 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 21.6 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 10.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 8.4 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 7.5 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.1 | 6.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 3.5 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 3.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 21.7 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 16.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 8.6 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.1 | 8.1 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.2 | 5.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 4.7 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
| 0.0 | 4.5 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.1 | 4.4 | GO:0043621 | protein self-association(GO:0043621) |
| 0.0 | 4.4 | GO:0003723 | RNA binding(GO:0003723) |
| 0.1 | 4.2 | GO:0005198 | structural molecule activity(GO:0005198) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 0.9 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.2 | 0.8 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 0.7 | ST G ALPHA I PATHWAY | G alpha i Pathway |
| 0.2 | 0.7 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.2 | 0.6 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.2 | 0.5 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.2 | 0.5 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.5 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 1.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.3 | 1.1 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.2 | 1.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.3 | 1.0 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.3 | 0.9 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.1 | 0.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.8 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
| 0.2 | 0.8 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |