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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G30650
Z-value: 0.88
Transcription factors associated with AT1G30650
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G30650
|
AT1G30650 | WRKY DNA-binding protein 14 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY14 | arTal_v1_Chr1_+_10868218_10868218 | 0.67 | 9.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.72 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.55 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.38 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.35 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 1.33 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.33 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 1.30 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 1.29 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 1.21 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr5_+_17526660_17526729 Show fit | 1.13 |
AT5G43630.2
AT5G43630.1 AT5G43630.3 AT5G43630.4 |
zinc knuckle (CCHC-type) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G30650
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.5 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.1 | 3.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.0 | 2.3 | GO:0072666 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.2 | 2.2 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.1 | 2.2 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.5 | 2.1 | GO:0030418 | nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351) |
| 0.2 | 2.0 | GO:0042753 | positive regulation of circadian rhythm(GO:0042753) |
| 0.1 | 1.9 | GO:0070417 | cellular response to cold(GO:0070417) |
| 0.0 | 1.9 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.0 | 1.8 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 3.2 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 3.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 2.2 | GO:0015934 | large ribosomal subunit(GO:0015934) |
| 0.0 | 2.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 1.7 | GO:0017119 | Golgi transport complex(GO:0017119) |
| 0.1 | 1.6 | GO:0097346 | INO80-type complex(GO:0097346) |
| 0.1 | 1.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 1.6 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.1 | 1.1 | GO:0016593 | Cdc73/Paf1 complex(GO:0016593) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.1 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 3.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.9 | 3.5 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.2 | 2.6 | GO:0016723 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 2.2 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
| 0.5 | 2.1 | GO:0030410 | nicotianamine synthase activity(GO:0030410) |
| 0.1 | 1.9 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.1 | 1.7 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
| 0.0 | 1.7 | GO:0030145 | manganese ion binding(GO:0030145) |
| 0.2 | 1.4 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.2 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.2 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.4 | 1.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 1.0 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.2 | 0.9 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.4 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.4 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
| 0.1 | 0.4 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.0 | 0.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |