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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G30490
Z-value: 0.72
Transcription factors associated with AT1G30490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G30490
|
AT1G30490 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| PHV | arTal_v1_Chr1_-_10801093_10801093 | 0.25 | 4.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 1.17 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 0.92 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr3_+_20612693_20612693 Show fit | 0.65 |
AT3G55580.1
|
Regulator of chromosome condensation (RCC1) family protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 0.60 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 0.56 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr3_-_82182_82182 Show fit | 0.50 |
AT3G01260.1
|
Galactose mutarotase-like superfamily protein |
|
| arTal_v1_Chr4_+_8827600_8827710 Show fit | 0.49 |
AT4G15430.2
AT4G15430.1 |
ERD (early-responsive to dehydration stress) family protein |
|
| arTal_v1_Chr3_+_2441565_2441657 Show fit | 0.48 |
AT3G07650.4
AT3G07650.1 AT3G07650.3 AT3G07650.2 |
CONSTANS-like 9 |
|
| arTal_v1_Chr2_-_18082776_18082776 Show fit | 0.47 |
AT2G43590.1
|
Chitinase family protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 0.46 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G30490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.6 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.1 | 1.1 | GO:0009819 | drought recovery(GO:0009819) |
| 0.0 | 1.0 | GO:0009269 | response to desiccation(GO:0009269) |
| 0.2 | 0.9 | GO:0031000 | response to caffeine(GO:0031000) response to alkaloid(GO:0043279) |
| 0.0 | 0.8 | GO:0006885 | regulation of pH(GO:0006885) |
| 0.1 | 0.7 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.0 | 0.6 | GO:0010274 | hydrotropism(GO:0010274) |
| 0.0 | 0.6 | GO:1905177 | tracheary element differentiation(GO:1905177) |
| 0.0 | 0.6 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.0 | 0.6 | GO:0070417 | cellular response to cold(GO:0070417) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 0.5 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
| 0.0 | 0.4 | GO:0071782 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
| 0.0 | 0.4 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 0.4 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 0.4 | GO:1903293 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.0 | 0.3 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.0 | 0.3 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
| 0.0 | 0.2 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 0.2 | GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 1.5 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 1.0 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.0 | 1.0 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 0.8 | GO:0004024 | alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
| 0.0 | 0.8 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 0.8 | GO:0043621 | protein self-association(GO:0043621) |
| 0.2 | 0.7 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.0 | 0.6 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 0.6 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.1 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.0 | 0.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
| 0.0 | 0.1 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.0 | 0.4 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.0 | 0.3 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
| 0.1 | 0.2 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.1 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
| 0.0 | 0.1 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.1 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |