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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G29860
Z-value: 0.58
Transcription factors associated with AT1G29860
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29860
|
AT1G29860 | WRKY DNA-binding protein 71 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY71 | arTal_v1_Chr1_+_10454433_10454433 | 0.01 | 9.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 0.53 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 0.51 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr2_-_16780368_16780368 Show fit | 0.51 |
AT2G40170.1
|
Stress induced protein |
|
| arTal_v1_Chr1_-_7553975_7553975 Show fit | 0.49 |
AT1G21550.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr1_+_3777236_3777236 Show fit | 0.47 |
AT1G11260.1
|
sugar transporter 1 |
|
| arTal_v1_Chr1_+_11931149_11931149 Show fit | 0.46 |
AT1G32928.1
|
Avr9/Cf-9 rapidly elicited protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 0.45 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_16838562_16838562 Show fit | 0.45 |
AT1G44350.1
|
IAA-amino acid hydrolase ILR1-like 6 |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 0.44 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 0.44 |
AT1G27730.1
|
salt tolerance zinc finger |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29860
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.2 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 7.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 1.4 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
| 0.0 | 1.0 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.0 | 1.0 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
| 0.1 | 0.9 | GO:0080086 | stamen filament development(GO:0080086) |
| 0.1 | 0.9 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
| 0.1 | 0.8 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 0.8 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
| 0.1 | 0.7 | GO:0009061 | anaerobic respiration(GO:0009061) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.7 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 0.5 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 0.4 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.0 | 0.4 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 0.4 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 0.3 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.1 | 0.3 | GO:0043668 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 0.3 | GO:0000127 | transcription factor TFIIIC complex(GO:0000127) |
| 0.0 | 0.2 | GO:0032541 | cortical endoplasmic reticulum(GO:0032541) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.3 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.0 | 0.9 | GO:0005345 | purine nucleobase transmembrane transporter activity(GO:0005345) |
| 0.1 | 0.8 | GO:0047631 | ADP-ribose diphosphatase activity(GO:0047631) |
| 0.0 | 0.8 | GO:0005179 | hormone activity(GO:0005179) |
| 0.1 | 0.7 | GO:0004020 | adenylylsulfate kinase activity(GO:0004020) |
| 0.1 | 0.7 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 0.7 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 0.7 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 0.6 | GO:0005365 | myo-inositol transmembrane transporter activity(GO:0005365) polyol transmembrane transporter activity(GO:0015166) |
| 0.1 | 0.6 | GO:1904680 | oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.0 | 0.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.1 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.1 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.1 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |