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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G29280
Z-value: 1.12
Transcription factors associated with AT1G29280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29280
|
AT1G29280 | WRKY DNA-binding protein 65 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY65 | arTal_v1_Chr1_+_10236337_10236337 | 0.43 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.89 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.52 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 1.43 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.39 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_22075277_22075277 Show fit | 1.34 |
AT5G54370.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
| arTal_v1_Chr5_-_14213293_14213293 Show fit | 1.26 |
AT5G36140.1
|
cytochrome P450, family 716, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.26 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.25 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr1_+_29135904_29135904 Show fit | 1.25 |
AT1G77530.1
AT1G77530.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr5_-_8508957_8508957 Show fit | 1.24 |
AT5G24780.2
|
vegetative storage protein 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 4.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 4.1 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.0 | 3.6 | GO:0009698 | phenylpropanoid metabolic process(GO:0009698) |
| 0.1 | 3.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.6 | GO:0090487 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
| 0.1 | 2.4 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 2.4 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 2.3 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.1 | 2.3 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 12.3 | GO:0055044 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.0 | 9.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 7.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.0 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.9 | GO:0005740 | mitochondrial envelope(GO:0005740) |
| 0.0 | 1.8 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
| 0.0 | 1.8 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 1.5 | GO:0000145 | exocyst(GO:0000145) |
| 0.0 | 1.3 | GO:0005759 | mitochondrial matrix(GO:0005759) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 5.0 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.5 | 3.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 3.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 3.7 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.0 | 3.7 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 3.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 2.7 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 2.6 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.1 | 0.6 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.3 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.2 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.0 | 0.2 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 0.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.1 | 1.3 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 0.7 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.7 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.4 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.3 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.3 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |