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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G29160
Z-value: 1.19
Transcription factors associated with AT1G29160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29160
|
AT1G29160 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G29160 | arTal_v1_Chr1_-_10184512_10184512 | 0.71 | 4.2e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 1.81 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.78 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.77 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 1.76 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 1.64 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 1.61 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 1.60 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 1.57 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 1.40 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.27 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.3 | GO:0009269 | response to desiccation(GO:0009269) |
| 0.0 | 3.1 | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
| 0.6 | 2.8 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.0 | 2.7 | GO:0009845 | seed germination(GO:0009845) |
| 0.2 | 2.2 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 2.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.0 | 2.2 | GO:0045036 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.0 | 2.2 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) negative regulation of response to alcohol(GO:1901420) |
| 0.1 | 2.0 | GO:0070417 | cellular response to cold(GO:0070417) |
| 0.0 | 2.0 | GO:0009739 | response to gibberellin(GO:0009739) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 30.4 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 6.9 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 6.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.5 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
| 0.0 | 4.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 4.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 3.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 2.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 2.3 | GO:0005802 | trans-Golgi network(GO:0005802) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 3.4 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.0 | 3.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.4 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 2.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 2.3 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.1 | 2.2 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.1 | 1.8 | GO:0008143 | poly(A) binding(GO:0008143) |
| 0.1 | 1.8 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
| 0.0 | 1.8 | GO:0003724 | RNA helicase activity(GO:0003724) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.4 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.3 | ST GAQ PATHWAY | G alpha q Pathway |
| 0.1 | 0.3 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
| 0.1 | 0.3 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 1.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 1.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 1.0 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.3 | 0.8 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 0.6 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.1 | 0.5 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 0.5 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.5 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.1 | 0.4 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |