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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G28470
Z-value: 1.83
Transcription factors associated with AT1G28470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G28470
|
AT1G28470 | NAC domain containing protein 10 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC010 | arTal_v1_Chr1_+_10010124_10010124 | 0.47 | 9.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 3.29 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 2.81 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr3_+_4729399_4729438 Show fit | 2.17 |
AT3G14210.1
AT3G14210.2 |
GDSL-like lipase/acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.98 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 1.83 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 1.82 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 1.80 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr2_+_19245591_19245684 Show fit | 1.79 |
AT2G46830.1
AT2G46830.2 |
circadian clock associated 1 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.77 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 1.72 |
AT2G15020.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G28470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 13.8 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.2 | 12.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 9.2 | GO:0006412 | translation(GO:0006412) |
| 0.6 | 7.2 | GO:0009608 | response to symbiont(GO:0009608) |
| 0.2 | 6.9 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.7 | 6.3 | GO:0009819 | drought recovery(GO:0009819) |
| 0.1 | 6.3 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.2 | 6.2 | GO:0009767 | photosynthetic electron transport chain(GO:0009767) |
| 0.1 | 5.9 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.2 | 5.6 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 118.2 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 61.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 50.7 | GO:0009536 | plastid(GO:0009536) |
| 0.0 | 22.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 20.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 13.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 12.1 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.1 | 11.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 10.2 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.2 | 9.7 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 23.8 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.1 | 22.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 15.2 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 14.7 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 8.3 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.1 | 8.0 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.2 | 7.9 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 7.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 7.7 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.1 | 7.6 | GO:0016859 | cis-trans isomerase activity(GO:0016859) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.4 | 1.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 0.9 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.3 | 0.9 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.9 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.3 | 0.8 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.2 | 0.7 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 0.6 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.8 | REACTOME TRANSLATION | Genes involved in Translation |
| 0.3 | 2.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.5 | 2.3 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.7 | 2.1 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.5 | 1.9 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.3 | 1.6 | REACTOME PLATELET AGGREGATION PLUG FORMATION | Genes involved in Platelet Aggregation (Plug Formation) |
| 0.1 | 1.6 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |
| 0.4 | 1.3 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
| 0.3 | 1.3 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.2 | 1.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |