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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G28370
Z-value: 0.82
Transcription factors associated with AT1G28370
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G28370
|
AT1G28370 | ERF domain protein 11 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF11 | arTal_v1_Chr1_-_9956960_9956980 | -0.36 | 2.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 2.60 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 1.95 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.66 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 1.55 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr3_+_20612693_20612693 Show fit | 1.46 |
AT3G55580.1
|
Regulator of chromosome condensation (RCC1) family protein |
|
| arTal_v1_Chr1_+_4662698_4662752 Show fit | 1.40 |
AT1G13609.1
AT1G13609.2 |
Defensin-like (DEFL) family protein |
|
| arTal_v1_Chr2_+_15106940_15106940 Show fit | 1.30 |
AT2G35960.1
|
NDR1/HIN1-like 12 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 1.28 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 1.27 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr2_+_19245591_19245684 Show fit | 1.23 |
AT2G46830.1
AT2G46830.2 |
circadian clock associated 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G28370
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.2 | GO:0006412 | translation(GO:0006412) |
| 0.1 | 4.0 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.4 | 3.5 | GO:0009819 | drought recovery(GO:0009819) |
| 0.0 | 3.4 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.4 | 2.4 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.4 | 2.3 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
| 0.2 | 2.3 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.1 | 2.2 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.0 | 2.2 | GO:0006413 | translational initiation(GO:0006413) |
| 0.2 | 2.0 | GO:0009608 | response to symbiont(GO:0009608) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 23.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 16.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 5.5 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 3.8 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 3.4 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.0 | 2.9 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.1 | 2.4 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 2.4 | GO:0044215 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.1 | 2.2 | GO:0005852 | eukaryotic translation initiation factor 3 complex(GO:0005852) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 3.6 | GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity(GO:0015405) |
| 0.0 | 3.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.1 | 2.5 | GO:0008143 | poly(A) binding(GO:0008143) |
| 0.4 | 2.4 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.6 | 2.3 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
| 0.1 | 2.3 | GO:0031369 | translation initiation factor binding(GO:0031369) |
| 0.1 | 2.3 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 0.0 | 2.2 | GO:0009931 | calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.0 | 1.8 | GO:0005319 | lipid transporter activity(GO:0005319) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.1 | 0.6 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
| 0.4 | 0.4 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 0.4 | PID MYC PATHWAY | C-MYC pathway |
| 0.1 | 0.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.3 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.1 | 0.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.1 | 1.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.2 | 0.6 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.1 | 0.6 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.6 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.1 | 0.4 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.4 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |
| 0.1 | 0.4 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
| 0.1 | 0.4 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |