ISMARA results: AT1G28300

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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G28300

Z-value: 0.48

Transcription factors associated with AT1G28300

Gene Symbol	Gene ID	Gene Info
AT1G28300 TAIR	AT1G28300	AP2/B3-like transcriptional factor family protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
LEC2	arTal_v1_Chr1_-_9899876_9899876	0.22	4.5e-01	Click!

Activity profile of AT1G28300 motif

Sorted Z-values of AT1G28300 motif

Top targets:

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr3_+_20354351_20354351 Show fit	1.42	AT3G54940.3 AT3G54940.2	AT3G54940 TAIR Show fit	Papain family cysteine protease
arTal_v1_Chr3_-_222827_222827 Show fit	0.70	AT3G01570.1	AT3G01570 TAIR Show fit	Oleosin family protein
arTal_v1_Chr5_-_17758275_17758336 Show fit	0.68	AT5G44120.2 AT5G44120.1 AT5G44120.3	CRA1 TAIR Show fit	RmlC-like cupins superfamily protein
arTal_v1_Chr1_+_25053673_25053673 Show fit	0.56	AT1G67100.1	LBD40 TAIR Show fit	LOB domain-containing protein 40
arTal_v1_Chr4_+_13611796_13611796 Show fit	0.53	AT4G27160.1	SESA3 TAIR Show fit	seed storage albumin 3
arTal_v1_Chr5_-_22239187_22239187 Show fit	0.52	AT5G54740.1	SESA5 TAIR Show fit	seed storage albumin 5
arTal_v1_Chr4_+_12900430_12900430 Show fit	0.46	AT4G25140.1	OLEO1 TAIR Show fit	oleosin 1
arTal_v1_Chr1_-_24183199_24183300 Show fit	0.45	AT1G65090.2 AT1G65090.1 AT1G65090.3	AT1G65090 TAIR Show fit	nucleolin
arTal_v1_Chr4_+_13607329_13607329 Show fit	0.44	AT4G27140.1	SESA1 TAIR Show fit	seed storage albumin 1
arTal_v1_Chr5_-_20591937_20591937 Show fit	0.39	AT5G50600.1	HSD1 TAIR Show fit	hydroxysteroid dehydrogenase 1

Showing 1 to 10 of 16 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28300

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.2	GO:0010344	seed oilbody biogenesis(GO:0010344)
0.1	0.3	GO:0060860	regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862) negative regulation of seed maturation(GO:2000692)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.4	GO:0005764	lysosome(GO:0005764)
0.0	1.2	GO:0012511	monolayer-surrounded lipid storage body(GO:0012511)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.4	GO:0004197	cysteine-type endopeptidase activity(GO:0004197)
0.0	0.7	GO:0045735	nutrient reservoir activity(GO:0045735)
0.0	0.5	GO:0043424	protein histidine kinase binding(GO:0043424)
0.1	0.4	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0033764)

Showing 1 to 4 of 4 entries

Results for AT1G28300

Z-value: 0.48

Transcription factors associated with AT1G28300

Activity-expression correlation:

Activity profile of AT1G28300 motif

Sorted Z-values of AT1G28300 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28300

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: