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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G28160
Z-value: 1.11
Transcription factors associated with AT1G28160
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G28160
|
AT1G28160 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G28160 | arTal_v1_Chr1_+_9839316_9839316 | -0.67 | 9.0e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_5765798_5765798 Show fit | 2.35 |
AT1G16850.1
|
transmembrane protein |
|
| arTal_v1_Chr2_+_9126263_9126263 Show fit | 2.10 |
AT2G21320.1
|
B-box zinc finger family protein |
|
| arTal_v1_Chr5_-_1994824_1994961 Show fit | 2.00 |
AT5G06530.2
AT5G06530.3 AT5G06530.4 AT5G06530.1 |
ABC-2 type transporter family protein |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 1.96 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.91 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr1_-_17266724_17266824 Show fit | 1.82 |
AT1G46768.3
AT1G46768.2 AT1G46768.1 |
related to AP2 1 |
|
| arTal_v1_Chr1_-_18238497_18238497 Show fit | 1.75 |
AT1G49310.1
|
transmembrane protein |
|
| arTal_v1_Chr3_-_20576249_20576249 Show fit | 1.58 |
AT3G55500.1
|
expansin A16 |
|
| arTal_v1_Chr1_+_23740493_23740562 Show fit | 1.50 |
AT1G63980.1
AT1G63980.2 |
D111/G-patch domain-containing protein |
|
| arTal_v1_Chr1_-_30142697_30142697 Show fit | 1.49 |
AT1G80130.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G28160
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.0 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.0 | 2.4 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.2 | 2.1 | GO:0070370 | cellular heat acclimation(GO:0070370) |
| 0.3 | 2.0 | GO:0010148 | transpiration(GO:0010148) |
| 0.0 | 1.8 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.4 | 1.5 | GO:0090069 | regulation of ribosome biogenesis(GO:0090069) |
| 0.3 | 1.3 | GO:0042218 | 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218) |
| 0.1 | 1.3 | GO:0031204 | posttranslational protein targeting to membrane, translocation(GO:0031204) |
| 0.2 | 1.2 | GO:0019048 | modulation by virus of host morphology or physiology(GO:0019048) |
| 0.0 | 1.2 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 1.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 1.3 | GO:0031205 | endoplasmic reticulum Sec complex(GO:0031205) |
| 0.1 | 0.9 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 0.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.9 | GO:1902554 | serine/threonine protein kinase complex(GO:1902554) |
| 0.0 | 0.9 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 0.7 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.7 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
| 0.0 | 0.7 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.4 | GO:0042626 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.3 | 3.2 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.2 | 1.7 | GO:0001872 | (1->3)-beta-D-glucan binding(GO:0001872) |
| 0.1 | 1.6 | GO:0008143 | poly(A) binding(GO:0008143) |
| 0.1 | 1.6 | GO:0097602 | cullin family protein binding(GO:0097602) |
| 0.1 | 1.3 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.1 | 1.3 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.2 | 1.2 | GO:0035197 | siRNA binding(GO:0035197) |
| 0.0 | 1.0 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 1.0 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |