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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G28160

Z-value: 1.11

Transcription factors associated with AT1G28160

Gene Symbol Gene ID Gene Info
AT1G28160 Integrase-type DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT1G28160arTal_v1_Chr1_+_9839316_9839316-0.679.0e-03Click!

Activity profile of AT1G28160 motif

Sorted Z-values of AT1G28160 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_-_5765798 2.35 AT1G16850.1
transmembrane protein
Chr2_+_9126263 2.10 AT2G21320.1
B-box zinc finger family protein
Chr5_-_1994824 2.00 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABC-2 type transporter family protein
Chr3_-_2699257 1.96 AT3G08860.2
PYRIMIDINE 4
Chr3_-_2699420 1.91 AT3G08860.1
PYRIMIDINE 4
Chr1_-_17266724 1.82 AT1G46768.3
AT1G46768.2
AT1G46768.1
related to AP2 1
Chr1_-_18238497 1.75 AT1G49310.1
transmembrane protein
Chr3_-_20576249 1.58 AT3G55500.1
expansin A16
Chr1_+_23740493 1.50 AT1G63980.1
AT1G63980.2
D111/G-patch domain-containing protein
Chr1_-_30142697 1.49 AT1G80130.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_22515391 1.20 AT5G55580.1
AT5G55580.3
AT5G55580.2
Mitochondrial transcription termination factor family protein
Chr1_+_11181504 1.17 AT1G31280.1
Argonaute family protein
Chr1_-_11595982 1.02 AT1G32190.2
AT1G32190.1
alpha/beta-Hydrolases superfamily protein
Chr4_-_13016235 1.02 AT4G25470.1
C-repeat/DRE binding factor 2
Chr4_-_10576619 0.96 AT4G19390.1
Uncharacterized protein family (UPF0114)
Chr3_-_20048190 0.94 AT3G54140.2
peptide transporter 1
Chr1_-_29005281 0.94 AT1G77200.1
Integrase-type DNA-binding superfamily protein
Chr1_+_23527570 0.94 AT1G63440.1
heavy metal atpase 5
Chr2_+_15005064 0.92 AT2G35700.1
ERF family protein 38
Chr1_+_23953099 0.92 AT1G64500.1
Glutaredoxin family protein
Chr3_-_20048745 0.91 AT3G54140.1
peptide transporter 1
Chr5_-_8982873 0.91 AT5G25800.2
AT5G25800.1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr5_-_3709403 0.89 AT5G11550.1
ARM repeat superfamily protein
Chr2_-_9266393 0.88 AT2G21660.2
cold, circadian rhythm, and rna binding 2
Chr1_+_18416474 0.87 AT1G49760.2
AT1G49760.1
poly(A) binding protein 8
Chr3_+_18262290 0.87 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
IQ-domain 21
Chr3_-_5445329 0.86 AT3G16050.1
pyridoxine biosynthesis 1.2
Chr4_-_10577404 0.86 AT4G19390.2
Uncharacterized protein family (UPF0114)
Chr4_+_7042354 0.85 AT4G11660.1
winged-helix DNA-binding transcription factor family protein
Chr3_-_3337446 0.85 AT3G10670.1
non-intrinsic ABC protein 7
Chr5_-_18021508 0.85 AT5G44670.1
glycosyltransferase family protein (DUF23)
Chr2_-_9266557 0.84 AT2G21660.1
cold, circadian rhythm, and rna binding 2
Chr4_-_11965684 0.83 AT4G22770.2
AT4G22770.1
AT hook motif DNA-binding family protein
Chr4_-_12068538 0.81 AT4G23020.2
AT4G23020.1
hypothetical protein
Chr3_+_17558793 0.81 AT3G47620.1
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Chr4_-_17564763 0.81 AT4G37330.1
cytochrome P450, family 81, subfamily D, polypeptide 4
Chr3_-_3282131 0.80 AT3G10525.1
LOSS OF GIANT CELLS FROM ORGANS
Chr5_+_25537074 0.80 AT5G63810.1
beta-galactosidase 10
Chr1_+_7404328 0.80 AT1G21140.1
Vacuolar iron transporter (VIT) family protein
Chr1_+_27786864 0.79 AT1G73885.1
AT-rich interactive domain protein
Chr4_+_9171280 0.79 AT4G16190.1
Papain family cysteine protease
Chr5_+_7946285 0.79 AT5G23575.1
Transmembrane CLPTM1 family protein
Chr1_+_9259432 0.79 AT1G26770.1
expansin A10
Chr1_-_5645443 0.79 AT1G16510.1
SAUR-like auxin-responsive protein family
Chr5_-_10295283 0.79 AT5G28300.1
Duplicated homeodomain-like superfamily protein
Chr1_+_25325138 0.77 AT1G67570.1
AT1G67570.2
zinc finger CONSTANS-like protein (DUF3537)
Chr1_+_14158452 0.76 AT1G37130.1
nitrate reductase 2
Chr1_+_9259750 0.76 AT1G26770.2
expansin A10
Chr3_+_1086516 0.76 AT3G04140.1
Ankyrin repeat family protein
Chr4_+_11306945 0.76 AT4G21210.2
AT4G21210.1
PPDK regulatory protein
Chr4_-_18428412 0.75 AT4G39710.2
AT4G39710.3
AT4G39710.1
FK506-binding protein 16-2
Chr1_+_18035967 0.75 AT1G48750.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_30376065 0.74 AT1G80830.1
AT1G80830.2
natural resistance-associated macrophage protein 1
Chr2_-_13392927 0.74 AT2G31410.1
coiled-coil protein
Chr3_-_9464676 0.73 AT3G25870.1
hypothetical protein
Chr5_+_22388782 0.72 AT5G55180.2
O-Glycosyl hydrolases family 17 protein
Chr5_+_6017797 0.72 AT5G18210.1
AT5G18210.2
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_1375742 0.71 AT1G04870.1
AT1G04870.2
protein arginine methyltransferase 10
Chr5_-_23523818 0.71 AT5G58130.1
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_18502725 0.71 AT3G49900.2
AT3G49900.1
Phototropic-responsive NPH3 family protein
Chr5_+_22388521 0.71 AT5G55180.1
O-Glycosyl hydrolases family 17 protein
Chr2_+_18145439 0.70 AT2G43800.1
Actin-binding FH2 (formin homology 2) family protein
Chr3_+_19421397 0.70 AT3G52380.1
chloroplast RNA-binding protein 33
Chr5_+_16893849 0.69 AT5G42250.1
Zinc-binding alcohol dehydrogenase family protein
Chr5_-_4722048 0.69 AT5G14640.2
shaggy-like kinase 13
Chr1_+_392831 0.69 AT1G02110.1
bZIP domain class transcription factor (DUF630 and DUF632)
Chr5_-_4722371 0.69 AT5G14640.1
shaggy-like kinase 13
Chr5_-_17258077 0.69 AT5G43020.1
Leucine-rich repeat protein kinase family protein
Chr5_-_230051 0.69 AT5G01600.1
ferretin 1
Chr4_+_15233042 0.68 AT4G31390.3
AT4G31390.1
AT4G31390.2
Protein kinase superfamily protein
Chr5_-_24317935 0.67 AT5G60460.2
Preprotein translocase Sec, Sec61-beta subunit protein
Chr2_+_9917443 0.67 AT2G23310.1
AT2G23310.2
Rer1 family protein
Chr5_-_14253434 0.67 AT5G36210.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_26052721 0.66 AT1G69295.2
plasmodesmata callose-binding protein 4
Chr1_-_26052567 0.66 AT1G69295.1
plasmodesmata callose-binding protein 4
Chr3_+_17420397 0.66 AT3G47290.1
AT3G47290.2
phosphatidylinositol-speciwc phospholipase C8
Chr5_+_26292372 0.66 AT5G65710.1
HAESA-like 2
Chr5_-_1057172 0.66 AT5G03910.1
ABC2 homolog 12
Chr1_+_3611490 0.66 AT1G10850.1
Leucine-rich repeat protein kinase family protein
Chr1_-_30260732 0.66 AT1G80480.1
plastid transcriptionally active 17
Chr2_+_9014470 0.65 AT2G20990.1
AT2G20990.2
AT2G20990.3
synaptotagmin A
Chr5_-_24318241 0.65 AT5G60460.1
Preprotein translocase Sec, Sec61-beta subunit protein
Chr4_+_2609066 0.64 AT4G05090.1
AT4G05090.2
Inositol monophosphatase family protein
Chr5_+_6387341 0.64 AT5G19090.1
AT5G19090.4
AT5G19090.3
AT5G19090.2
Heavy metal transport/detoxification superfamily protein
Chr4_-_16758358 0.64 AT4G35230.1
BR-signaling kinase 1
Chr1_-_4217412 0.63 AT1G12380.1
hypothetical protein
Chr1_+_176141 0.63 AT1G01480.2
1-amino-cyclopropane-1-carboxylate synthase 2
Chr1_+_175706 0.63 AT1G01480.1
1-amino-cyclopropane-1-carboxylate synthase 2
Chr1_+_17424473 0.63 AT1G47490.2
AT1G47490.1
RNA-binding protein 47C
Chr4_+_16091535 0.62 AT4G33440.1
Pectin lyase-like superfamily protein
Chr5_-_25225052 0.62 AT5G62820.1
Uncharacterized protein family (UPF0497)
Chr1_-_2143977 0.62 AT1G06980.1
6,7-dimethyl-8-ribityllumazine synthase
Chr4_+_453347 0.61 AT4G01040.1
AT4G01040.2
Glycosyl hydrolase superfamily protein
Chr1_+_4194420 0.61 AT1G12330.1
cyclin-dependent kinase-like protein
Chr3_+_270221 0.59 AT3G01750.1
AT3G01750.2
Ankyrin repeat family protein
Chr1_-_27582685 0.59 AT1G73360.1
homeodomain GLABROUS 11
Chr2_+_17009951 0.59 AT2G40760.1
Rhodanese/Cell cycle control phosphatase superfamily protein
Chr1_-_29879204 0.58 AT1G79430.1
AT1G79430.2
Homeodomain-like superfamily protein
Chr5_+_25756272 0.57 AT5G64420.1
DNA polymerase V family
Chr3_+_16383595 0.56 AT3G44880.1
Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Chr4_-_15664948 0.56 AT4G32460.2
AT4G32460.1
AT4G32460.3
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr2_-_15151575 0.56 AT2G36080.3
AT2G36080.2
AT2G36080.4
AT2G36080.1
AP2/B3-like transcriptional factor family protein
Chr3_+_5518211 0.56 AT3G16280.2
AT3G16280.1
Integrase-type DNA-binding superfamily protein
Chr4_+_17695496 0.55 AT4G37660.1
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Chr1_+_24929887 0.55 AT1G66820.1
glycine-rich protein
Chr1_-_29965758 0.55 AT1G79630.2
AT1G79630.1
AT1G79630.7
AT1G79630.5
AT1G79630.4
AT1G79630.8
AT1G79630.3
AT1G79630.6
Protein phosphatase 2C family protein
Chr4_-_17561975 0.55 AT4G37320.1
cytochrome P450, family 81, subfamily D, polypeptide 5
Chr5_+_24732597 0.55 AT5G61490.1
transmembrane protein
Chr5_+_23355337 0.55 AT5G57660.1
CONSTANS-like 5
Chr5_-_19977620 0.55 AT5G49280.1
hydroxyproline-rich glycoprotein family protein
Chr3_-_19595834 0.54 AT3G52870.1
IQ calmodulin-binding motif family protein
Chr5_+_3606385 0.53 AT5G11310.1
Pentatricopeptide repeat (PPR) superfamily protein
Chr2_-_16700309 0.53 AT2G39990.1
eukaryotic translation initiation factor 2
Chr3_-_623739 0.53 AT3G02850.1
AT3G02850.2
STELAR K+ outward rectifier
Chr5_+_22156304 0.52 AT5G54540.1
Uncharacterized conserved protein (UCP012943)
Chr5_-_3447278 0.52 AT5G10930.1
CBL-interacting protein kinase 5
Chr4_+_16410791 0.52 AT4G34290.1
SWIB/MDM2 domain superfamily protein
Chr1_+_22409298 0.52 AT1G60870.1
maternal effect embryo arrest 9
Chr1_+_9020380 0.51 AT1G26090.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_3487547 0.51 AT1G10570.3
AT1G10570.1
Cysteine proteinases superfamily protein
Chr1_-_19690589 0.51 AT1G52880.1
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr1_-_23801720 0.51 AT1G64110.1
AT1G64110.3
AT1G64110.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_24480291 0.51 AT5G60850.1
OBF binding protein 4
Chr1_-_1534767 0.50 AT1G05270.1
TraB family protein
Chr5_-_6793419 0.50 AT5G20110.2
AT5G20110.1
Dynein light chain type 1 family protein
Chr2_-_10672892 0.50 AT2G25090.1
CBL-interacting protein kinase 16
Chr5_-_5872782 0.50 AT5G17790.1
zinc finger (Ran-binding) family protein
Chr1_-_4590501 0.49 AT1G13380.1
sodium/hydrogen exchanger (DUF1218)
Chr1_+_27784928 0.49 AT1G73880.1
UDP-glucosyl transferase 89B1
Chr2_-_13613573 0.49 AT2G31990.1
AT2G31990.3
AT2G31990.2
Exostosin family protein
Chr5_+_937817 0.48 AT5G03660.3
AT5G03660.1
transcriptional activator (DUF662)
Chr3_-_22295529 0.48 AT3G60320.1
bZIP domain class transcription factor (DUF630 and DUF632)
Chr4_-_16659486 0.48 AT4G34980.1
subtilisin-like serine protease 2
Chr2_+_19472573 0.47 AT2G47450.1
chloroplast signal recognition particle component (CAO)
Chr5_+_7394443 0.47 AT5G22340.1
AT5G22340.2
NF-kappa-B inhibitor-like protein
Chr5_-_305912 0.47 AT5G01790.1
hypothetical protein
Chr1_-_12059792 0.47 AT1G33250.1
beta-1,3-n-acetylglucosaminyltransferase radical fringe protein, putative (DUF604)
Chr2_-_14902385 0.47 AT2G35430.1
Zinc finger C-x8-C-x5-C-x3-H type family protein
Chr2_+_14856664 0.46 AT2G35270.1
Putative AT-hook DNA-binding family protein
Chr3_-_23186720 0.46 AT3G62690.1
AtL5
Chr3_-_14095588 0.46 AT3G33520.1
actin-related protein 6
Chr4_+_16402129 0.46 AT4G34265.1
AT4G34265.4
AT4G34265.3
AT4G34265.2
AT4G34265.5
AT4G34265.6
hypothetical protein
Chr5_+_15911350 0.46 AT5G39760.1
homeobox protein 23
Chr1_-_8266048 0.46 AT1G23300.1
MATE efflux family protein
Chr2_-_18519731 0.46 AT2G44910.1
homeobox-leucine zipper protein 4
Chr5_+_2271890 0.46 AT5G07240.2
AT5G07240.1
IQ-domain 24
Chr3_+_649814 0.45 AT3G02910.1
AIG2-like (avirulence induced gene) family protein
Chr5_+_8735944 0.45 AT5G25220.1
AT5G25220.2
homeobox protein knotted-1-like 3
Chr5_+_6387735 0.45 AT5G19090.5
Heavy metal transport/detoxification superfamily protein
Chr1_+_20235465 0.45 AT1G54200.1
DNA mismatch repair Msh6-like protein
Chr3_+_17937047 0.45 AT3G48430.2
relative of early flowering 6
Chr2_-_549510 0.45 AT2G02148.3
AT2G02148.2
AT2G02148.1
AT2G02148.5
AT2G02148.4
PPR containing protein
Chr5_-_18736815 0.44 AT5G46210.1
cullin4
Chr4_-_16767087 0.44 AT4G35240.1
AT4G35240.4
AT4G35240.2
DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632)
Chr3_-_20223028 0.44 AT3G54630.1
kinetochore protein
Chr4_+_1374160 0.44 AT4G03100.1
Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
Chr2_-_183639 0.43 AT2G01420.3
AT2G01420.1
AT2G01420.2
Auxin efflux carrier family protein
Chr5_-_902757 0.43 AT5G03560.4
AT5G03560.3
AT5G03560.1
AT5G03560.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_8654450 0.43 AT2G20050.2
protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
Chr5_-_23785512 0.43 AT5G58900.1
Homeodomain-like transcriptional regulator
Chr4_-_10007443 0.43 AT4G18020.10
AT4G18020.11
AT4G18020.3
AT4G18020.4
AT4G18020.2
AT4G18020.7
AT4G18020.1
AT4G18020.5
AT4G18020.8
AT4G18020.6
CheY-like two-component responsive regulator family protein
Chr4_+_2536925 0.42 AT4G04970.1
glucan synthase-like 1
Chr2_-_8654819 0.42 AT2G20050.1
protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
Chr2_+_15119516 0.42 AT2G36010.3
AT2G36010.1
AT2G36010.2
E2F transcription factor 3
Chr5_+_26261136 0.42 AT5G65683.1
Zinc finger (C3HC4-type RING finger) family protein
Chr1_-_19314195 0.41 AT1G51965.1
ABA Overly-Sensitive 5
Chr3_-_851741 0.41 AT3G03550.1
RING/U-box superfamily protein
Chr5_+_2763823 0.41 AT5G08540.1
ribosomal RNA small subunit methyltransferase J
Chr4_-_15664780 0.41 AT4G32460.4
choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Chr4_-_10278794 0.40 AT4G18670.1
Leucine-rich repeat (LRR) family protein
Chr5_+_3831500 0.40 AT5G11890.1
harpin-induced protein
Chr1_-_24176253 0.40 AT1G65070.1
AT1G65070.4
AT1G65070.2
AT1G65070.3
DNA mismatch repair protein MutS, type 2
Chr1_+_12004854 0.40 AT1G33110.1
AT1G33110.2
MATE efflux family protein
Chr1_+_25374072 0.40 AT1G67700.1
AT1G67700.2
AT1G67700.5
AT1G67700.4
AT1G67700.3
multidrug resistance protein
Chr2_-_13835758 0.40 AT2G32600.1
hydroxyproline-rich glycoprotein family protein
Chr4_-_9421857 0.40 AT4G16750.1
Integrase-type DNA-binding superfamily protein
Chr3_+_23345754 0.40 AT3G63200.1
PATATIN-like protein 9
Chr5_-_20200468 0.40 AT5G49720.1
glycosyl hydrolase 9A1
Chr2_+_16869189 0.39 AT2G40400.1
AT2G40400.2
AT2G40400.3
DUF399 family protein, putative (DUF399 and DUF3411)
Chr1_-_24438623 0.39 AT1G65710.1
serine/arginine repetitive matrix-like protein
Chr1_-_23892193 0.38 AT1G64380.1
Integrase-type DNA-binding superfamily protein
Chr3_+_6146015 0.38 AT3G17950.3
AT3G17950.1
AT3G17950.2
transmembrane protein
Chr3_+_6024795 0.38 AT3G17611.3
AT3G17611.1
AT3G17611.2
RHOMBOID-like protein 14
Chr1_-_28616785 0.38 AT1G76270.1
O-fucosyltransferase family protein
Chr5_+_1551298 0.38 AT5G05230.1
RING/U-box superfamily protein
Chr2_-_16042383 0.38 AT2G38290.2
AT2G38290.1
ammonium transporter 2
Chr1_+_195812 0.38 AT1G01540.1
Protein kinase superfamily protein
Chr5_+_26799738 0.38 AT5G67170.3
AT5G67170.2
AT5G67170.1
SEC-C motif-containing protein / OTU-like cysteine protease family protein
Chr3_+_6820926 0.37 AT3G19640.1
magnesium transporter 4
Chr4_+_13184114 0.37 AT4G25970.1
phosphatidylserine decarboxylase 3
Chr1_+_29387672 0.37 AT1G78100.1
F-box family protein
Chr5_-_3065889 0.37 AT5G09850.2
AT5G09850.1
AT5G09850.3
AT5G09850.4
AT5G09850.5
Transcription elongation factor (TFIIS) family protein
Chr5_-_1302477 0.37 AT5G04540.1
Myotubularin-like phosphatases II superfamily
Chr3_-_8268961 0.37 AT3G23170.1
hypothetical protein
Chr4_-_16764760 0.37 AT4G35240.3
DNA-directed RNA polymerase subunit beta, putative (DUF630 and DUF632)
Chr5_+_1399395 0.37 AT5G04820.1
ovate family protein 13
Chr5_+_937998 0.37 AT5G03660.2
transcriptional activator (DUF662)
Chr2_+_15075343 0.36 AT2G35920.2
AT2G35920.3
RNA helicase family protein
Chr1_+_5451432 0.36 AT1G15840.1
hypothetical protein
Chr4_+_17307709 0.36 AT4G36720.1
HVA22-like protein K

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28160

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.5 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.3 2.0 GO:0010148 transpiration(GO:0010148)
0.3 0.8 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.3 1.3 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.2 0.7 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.2 0.7 GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.2 2.1 GO:0070370 cellular heat acclimation(GO:0070370)
0.2 1.2 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.2 0.6 GO:0046740 transport of virus in host, cell to cell(GO:0046740) multi-organism intercellular transport(GO:1902586)
0.2 0.9 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.2 3.0 GO:0006949 syncytium formation(GO:0006949)
0.2 0.9 GO:1990169 detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169)
0.2 0.8 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.2 0.5 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.7 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.1 0.7 GO:1901562 response to paraquat(GO:1901562)
0.1 1.3 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.1 0.3 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 0.4 GO:0015696 ammonium transport(GO:0015696)
0.1 0.4 GO:0010541 acropetal auxin transport(GO:0010541)
0.1 0.4 GO:1901031 regulation of response to reactive oxygen species(GO:1901031)
0.1 1.1 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.1 0.3 GO:0071763 nuclear membrane organization(GO:0071763)
0.1 0.9 GO:0016926 protein desumoylation(GO:0016926)
0.1 0.3 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.1 0.5 GO:2000580 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.1 0.7 GO:0033169 histone H3-K9 demethylation(GO:0033169) negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.1 0.8 GO:0010088 phloem development(GO:0010088)
0.1 1.0 GO:0042732 D-xylose metabolic process(GO:0042732)
0.1 0.7 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 0.3 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.1 0.1 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.1 0.7 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 0.5 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.1 0.4 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.1 0.3 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 0.3 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.1 0.4 GO:0009584 detection of visible light(GO:0009584)
0.1 0.3 GO:0051180 vitamin transport(GO:0051180)
0.1 0.3 GO:0006106 fumarate metabolic process(GO:0006106)
0.1 1.1 GO:0051017 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.1 0.7 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.1 0.7 GO:0006621 protein retention in ER lumen(GO:0006621)
0.1 0.4 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 2.4 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0010376 stomatal complex formation(GO:0010376)
0.0 0.5 GO:0043486 histone exchange(GO:0043486)
0.0 0.4 GO:0060866 leaf abscission(GO:0060866)
0.0 0.4 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.2 GO:0071731 response to nitric oxide(GO:0071731)
0.0 0.5 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.4 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 0.7 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.2 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 1.1 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 1.2 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.0 0.4 GO:0051446 positive regulation of meiotic cell cycle(GO:0051446)
0.0 0.4 GO:0048572 short-day photoperiodism(GO:0048572) short-day photoperiodism, flowering(GO:0048575)
0.0 0.6 GO:0046855 inositol phosphate dephosphorylation(GO:0046855) inositol phosphate catabolic process(GO:0071545)
0.0 0.5 GO:0006814 sodium ion transport(GO:0006814)
0.0 0.6 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.7 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.0 0.4 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.0 0.7 GO:0055075 potassium ion homeostasis(GO:0055075)
0.0 0.2 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.8 GO:0010229 inflorescence development(GO:0010229)
0.0 0.6 GO:0006075 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.0 0.3 GO:0002697 regulation of immune effector process(GO:0002697) regulation of defense response to virus(GO:0050688)
0.0 0.3 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.5 GO:0009827 plant-type cell wall modification(GO:0009827)
0.0 0.8 GO:0016226 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.1 GO:0042939 glutathione transport(GO:0034635) tripeptide transport(GO:0042939)
0.0 0.5 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.0 GO:0055047 generative cell mitosis(GO:0055047)
0.0 1.8 GO:0006972 hyperosmotic response(GO:0006972)
0.0 0.2 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.4 GO:0010315 auxin efflux(GO:0010315)
0.0 0.3 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.0 0.2 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.0 0.4 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.1 GO:0010067 procambium histogenesis(GO:0010067)
0.0 0.8 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.5 GO:1901068 guanosine-containing compound metabolic process(GO:1901068)
0.0 1.2 GO:0034605 cellular response to heat(GO:0034605)
0.0 0.1 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.0 0.3 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.5 GO:0071805 cellular potassium ion transport(GO:0071804) potassium ion transmembrane transport(GO:0071805)
0.0 0.3 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.4 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.1 GO:0080001 mucilage extrusion from seed coat(GO:0080001)
0.0 0.7 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.2 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.0 GO:0048479 style development(GO:0048479) stigma development(GO:0048480)
0.0 0.0 GO:0046416 D-amino acid metabolic process(GO:0046416)
0.0 1.2 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.2 GO:0055062 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.1 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.3 GO:0031124 mRNA 3'-end processing(GO:0031124)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.3 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 0.4 GO:0005775 vacuolar lumen(GO:0005775)
0.1 0.9 GO:0005884 actin filament(GO:0005884)
0.1 0.5 GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541)
0.1 0.5 GO:0030286 dynein complex(GO:0030286)
0.1 0.6 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.1 0.5 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.4 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.3 GO:0005845 mRNA cap binding complex(GO:0005845)
0.0 0.9 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.2 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.5 GO:0048500 signal recognition particle(GO:0048500)
0.0 0.4 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.7 GO:0009508 plastid chromosome(GO:0009508)
0.0 0.7 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.6 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.3 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.2 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.4 GO:0005769 early endosome(GO:0005769)
0.0 0.3 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.2 GO:0005844 polysome(GO:0005844)
0.0 0.9 GO:1902554 serine/threonine protein kinase complex(GO:1902554)
0.0 0.1 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.3 GO:0000786 nucleosome(GO:0000786)
0.0 0.9 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.0 0.7 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 1.4 GO:0010287 plastoglobule(GO:0010287)
0.0 0.4 GO:0005686 U2 snRNP(GO:0005686)
0.0 0.6 GO:0005764 lysosome(GO:0005764)
0.0 0.6 GO:0032592 integral component of mitochondrial membrane(GO:0032592)
0.0 0.3 GO:0045239 tricarboxylic acid cycle enzyme complex(GO:0045239)
0.0 0.3 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.0 GO:0009925 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 1.4 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.4 GO:0000137 Golgi cis cisterna(GO:0000137)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 3.2 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.3 0.8 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.2 1.7 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.2 0.7 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.2 1.2 GO:0035197 siRNA binding(GO:0035197)
0.2 0.9 GO:0070140 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.2 0.6 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.1 0.7 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 1.3 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.1 0.4 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.1 0.4 GO:0004609 phosphatidylserine decarboxylase activity(GO:0004609)
0.1 0.4 GO:0052629 phosphatidylinositol-3-phosphatase activity(GO:0004438) phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.6 GO:0010277 chlorophyllide a oxygenase [overall] activity(GO:0010277)
0.1 0.3 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.1 1.3 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.3 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.1 0.5 GO:0045505 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.1 0.3 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 0.6 GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity(GO:0008441)
0.1 0.8 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.1 0.7 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 0.5 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.1 0.7 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.1 0.5 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 0.4 GO:0009883 red or far-red light photoreceptor activity(GO:0009883)
0.1 1.6 GO:0008143 poly(A) binding(GO:0008143)
0.1 0.7 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.1 0.7 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 0.3 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.1 0.4 GO:0015391 nucleobase:cation symporter activity(GO:0015391)
0.1 0.3 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.1 0.4 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 1.6 GO:0097602 cullin family protein binding(GO:0097602)
0.1 0.3 GO:0004333 fumarate hydratase activity(GO:0004333)
0.1 0.6 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.1 0.2 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.1 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.0 1.0 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.6 GO:0008061 chitin binding(GO:0008061)
0.0 0.7 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.2 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.6 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.7 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384) cadmium ion transmembrane transporter activity(GO:0015086)
0.0 0.9 GO:0016843 amine-lyase activity(GO:0016843)
0.0 0.4 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.5 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.5 GO:0008097 5S rRNA binding(GO:0008097)
0.0 0.4 GO:0010997 anaphase-promoting complex binding(GO:0010997)
0.0 0.8 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.5 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.6 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.6 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.2 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.3 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.0 0.4 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 4.4 GO:0042626 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492)
0.0 0.1 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.0 0.2 GO:0035198 miRNA binding(GO:0035198)
0.0 0.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 1.0 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.3 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.5 GO:0051087 chaperone binding(GO:0051087)
0.0 0.1 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 0.5 GO:0016776 phosphotransferase activity, phosphate group as acceptor(GO:0016776)
0.0 0.0 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.0 0.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.7 GO:0004527 exonuclease activity(GO:0004527)
0.0 0.3 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.0 0.3 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.1 GO:0048038 quinone binding(GO:0048038)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID P73PATHWAY p73 transcription factor network
0.0 0.4 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 0.1 PID AP1 PATHWAY AP-1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing