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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT1G24260

Z-value: 5.04

Transcription factors associated with AT1G24260

Gene Symbol Gene ID Gene Info
AT1G24260
AT1G24260 K-box region and MADS-box transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
SEP3arTal_v1_Chr1_-_8596098_8596123-0.612.1e-02Click!

Activity profile of AT1G24260 motif

Sorted Z-values of AT1G24260 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_17712290 11.07 AT2G42540.2
AT2G42540.4
AT2G42540.1
AT2G42540.3
COR15A
cold-regulated 15a
Chr2_-_17710433 8.89 AT2G42530.1
COR15B
cold regulated 15b
Chr1_-_10289666 6.52 AT1G29395.1
COR413IM1
COLD REGULATED 314 INNER MEMBRANE 1
Chr5_+_21240717 6.35 AT5G52310.1
LTI78
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Chr3_-_23334034 6.33 AT3G63160.1
OEP6
outer envelope membrane protein
Chr5_+_17987591 6.17 AT5G44590.2
AT5G44590.1
AT5G44590
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_16079679 5.40 AT2G38390.1
AT2G38390
Peroxidase superfamily protein
Chr2_-_16603059 5.33 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr4_-_9607402 4.98 AT4G17090.1
CT-BMY
chloroplast beta-amylase
Chr5_-_20204595 4.98 AT5G49730.1
AT5G49730.2
FRO6
ferric reduction oxidase 6
Chr3_-_18375784 4.89 AT3G49580.3
AT3G49580.2
LSU1
response to low sulfur 1
Chr1_+_27778984 4.82 AT1G73870.1
BBX16
B-box type zinc finger protein with CCT domain-containing protein
Chr3_-_17306633 4.68 AT3G46970.1
PHS2
alpha-glucan phosphorylase 2
Chr5_-_5177897 4.60 AT5G15850.1
COL1
CONSTANS-like 1
Chr5_+_17526660 4.57 AT5G43630.2
AT5G43630.1
AT5G43630.3
AT5G43630.4
TZP
zinc knuckle (CCHC-type) family protein
Chr1_-_3756998 4.55 AT1G11210.1
AT1G11210
cotton fiber protein, putative (DUF761)
Chr2_-_16603319 4.49 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr3_-_18375940 4.48 AT3G49580.1
LSU1
response to low sulfur 1
Chr5_-_6850237 4.37 AT5G20280.1
SPS1F
sucrose phosphate synthase 1F
Chr2_+_1966806 4.34 AT2G05380.1
AT2G05380.2
GRP3S
glycine-rich protein 3 short isoform
Chr2_+_19232607 4.29 AT2G46790.3
AT2G46790.4
AT2G46790.1
AT2G46790.2
AT2G46790.5
PRR9
pseudo-response regulator 9
Chr2_-_18811085 4.29 AT2G45660.2
AT2G45660.1
AGL20
AGAMOUS-like 20
Chr2_+_1966610 4.29 AT2G05380.3
GRP3S
glycine-rich protein 3 short isoform
Chr3_-_18718396 4.25 AT3G50440.1
MES10
methylesterase
Chr3_+_15983199 4.20 AT3G44300.1
NIT2
nitrilase 2
Chr3_+_7959753 4.17 AT3G22440.1
AT3G22440
FRIGIDA-like protein
Chr1_-_12224000 4.16 AT1G33720.5
AT1G33720.1
AT1G33720.3
AT1G33720.2
AT1G33720.4
CYP76C6
cytochrome P450, family 76, subfamily C, polypeptide 6
Chr4_-_18472048 4.14 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr1_-_9275193 4.09 AT1G26790.1
AT1G26790
Dof-type zinc finger DNA-binding family protein
Chr1_+_24554413 4.03 AT1G65960.4
GAD2
glutamate decarboxylase 2
Chr1_+_26122080 4.03 AT1G69490.1
NAP
NAC-like, activated by AP3/PI
Chr2_+_17057388 3.98 AT2G40880.1
CYSA
cystatin A
Chr3_+_16818347 3.96 AT3G45780.2
PHOT1
phototropin 1
Chr3_-_16074929 3.94 AT3G44450.1
AT3G44450
hypothetical protein
Chr4_+_17639 3.90 AT4G00050.1
AT4G00050.3
AT4G00050.2
UNE10
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_16816721 3.86 AT3G45780.1
PHOT1
phototropin 1
Chr4_-_407142 3.85 AT4G00950.1
MEE47
hypothetical protein (DUF688)
Chr2_-_14310608 3.85 AT2G33830.2
AT2G33830
Dormancy/auxin associated family protein
Chr1_-_20310850 3.85 AT1G54410.1
AT1G54410
dehydrin family protein
Chr4_+_13725546 3.84 AT4G27440.2
AT4G27440.1
PORB
protochlorophyllide oxidoreductase B
Chr1_-_2165261 3.84 AT1G07050.2
AT1G07050.1
AT1G07050
CCT motif family protein
Chr4_+_12524186 3.80 AT4G24120.1
YSL1
YELLOW STRIPE like 1
Chr4_+_12310885 3.75 AT4G23600.2
CORI3
Tyrosine transaminase family protein
Chr5_+_17968092 3.75 AT5G44572.1
AT5G44572
transmembrane protein
Chr4_+_12310619 3.75 AT4G23600.3
CORI3
Tyrosine transaminase family protein
Chr2_-_14310339 3.75 AT2G33830.1
AT2G33830
Dormancy/auxin associated family protein
Chr2_-_17202848 3.74 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_+_12310379 3.73 AT4G23600.1
CORI3
Tyrosine transaminase family protein
Chr1_+_24551807 3.72 AT1G65960.3
AT1G65960.1
GAD2
glutamate decarboxylase 2
Chr4_-_1500100 3.70 AT4G03400.2
DFL2
Auxin-responsive GH3 family protein
Chr3_-_23195917 3.64 AT3G62700.1
ABCC14
multidrug resistance-associated protein 10
Chr4_+_8839256 3.63 AT4G15450.1
AT4G15450.2
AT4G15450
Senescence/dehydration-associated protein-like protein
Chr3_-_5173001 3.63 AT3G15354.4
AT3G15354.1
AT3G15354.2
AT3G15354.3
SPA3
SPA1-related 3
Chr1_+_25746697 3.58 AT1G68570.1
AT1G68570
Major facilitator superfamily protein
Chr4_-_9935685 3.58 AT4G17880.1
MYC4
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr5_-_1994824 3.56 AT5G06530.2
AT5G06530.3
AT5G06530.4
AT5G06530.1
ABCG22
ABC-2 type transporter family protein
Chr3_-_3282131 3.51 AT3G10525.1
LGO
LOSS OF GIANT CELLS FROM ORGANS
Chr5_-_6976036 3.46 AT5G20630.1
GER3
germin 3
Chr5_-_18768992 3.44 AT5G46270.2
AT5G46270.3
AT5G46270.4
AT5G46270.1
AT5G46270.5
AT5G46270
Disease resistance protein (TIR-NBS-LRR class) family
Chr1_+_25746994 3.41 AT1G68570.2
AT1G68570
Major facilitator superfamily protein
Chr4_-_1501599 3.38 AT4G03400.1
DFL2
Auxin-responsive GH3 family protein
Chr3_-_17506124 3.38 AT3G47500.1
CDF3
cycling DOF factor 3
Chr3_+_4937172 3.36 AT3G14690.2
AT3G14690.1
CYP72A15
cytochrome P450, family 72, subfamily A, polypeptide 15
Chr1_+_24552003 3.35 AT1G65960.2
GAD2
glutamate decarboxylase 2
Chr4_-_17830465 3.34 AT4G37920.1
AT4G37920
endoribonuclease E-like protein
Chr1_+_7823066 3.31 AT1G22160.1
AT1G22160
senescence-associated family protein (DUF581)
Chr5_-_18026077 3.30 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr4_-_7553332 3.30 AT4G12910.2
AT4G12910.1
scpl20
serine carboxypeptidase-like 20
Chr2_-_521707 3.27 AT2G02080.4
AT2G02080.2
AT2G02080.5
AT2G02080.6
AT2G02080.3
AT2G02080.1
IDD4
indeterminate(ID)-domain 4
Chr5_-_4392429 3.25 AT5G13630.1
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr5_-_4392227 3.25 AT5G13630.2
GUN5
magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)
Chr4_+_16136749 3.24 AT4G33565.1
AT4G33565
RING/U-box superfamily protein
Chr5_-_4430901 3.24 AT5G13730.1
SIG4
sigma factor 4
Chr1_+_20447157 3.24 AT1G54820.1
AT1G54820.2
AT1G54820.3
AT1G54820.4
AT1G54820
Protein kinase superfamily protein
Chr3_+_5081780 3.20 AT3G15095.2
AT3G15095.1
AT3G15095.3
HCF243
Serine/Threonine-kinase pakA-like protein
Chr2_+_6893949 3.19 AT2G15830.1
AT2G15830
hypothetical protein
Chr4_+_14317226 3.18 AT4G29060.1
AT4G29060.2
emb2726
elongation factor Ts family protein
Chr4_+_12456342 3.17 AT4G23990.1
CSLG3
cellulose synthase like G3
Chr1_-_26163715 3.16 AT1G69570.1
AT1G69570
Dof-type zinc finger DNA-binding family protein
Chr1_+_20387058 3.15 AT1G54575.1
AT1G54575
hypothetical protein
Chr4_+_8360996 3.14 AT4G14560.1
IAA1
indole-3-acetic acid inducible
Chr1_+_29356346 3.13 AT1G78070.2
AT1G78070.3
AT1G78070
Transducin/WD40 repeat-like superfamily protein
Chr4_-_7316871 3.12 AT4G12320.1
CYP706A6
cytochrome P450, family 706, subfamily A, polypeptide 6
Chr2_-_5675995 3.10 AT2G13610.1
ABCG5
ABC-2 type transporter family protein
Chr3_+_16525245 3.07 AT3G45140.1
AT3G45140.2
LOX2
lipoxygenase 2
Chr4_-_843531 3.06 AT4G01940.1
NFU1
NFU domain protein 1
Chr5_-_24083528 3.06 AT5G59780.2
AT5G59780.1
AT5G59780.3
MYB59
myb domain protein 59
Chr5_+_5211719 3.06 AT5G15970.1
KIN2
stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)
Chr1_-_26800483 3.05 AT1G71040.1
LPR2
Cupredoxin superfamily protein
Chr5_+_26884203 3.04 AT5G67385.3
AT5G67385.1
AT5G67385.5
AT5G67385.4
AT5G67385
Phototropic-responsive NPH3 family protein
Chr2_-_15783480 3.03 AT2G37630.1
AS1
myb-like HTH transcriptional regulator family protein
Chr2_+_15917032 3.03 AT2G38040.1
AT2G38040.2
CAC3
acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit
Chr5_-_19135414 3.01 AT5G47110.1
LIL3:2
Chlorophyll A-B binding family protein
Chr4_+_12457466 3.01 AT4G23990.2
CSLG3
cellulose synthase like G3
Chr1_+_12026936 3.00 AT1G33170.1
AT1G33170
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_-_17197247 3.00 AT4G36390.1
AT4G36390
Methylthiotransferase
Chr1_+_20386809 2.98 AT1G54575.2
AT1G54575
hypothetical protein
Chr1_-_28442429 2.98 AT1G75750.2
AT1G75750.1
GASA1
GAST1 protein homolog 1
Chr3_-_7796310 2.94 AT3G22120.1
AT3G22120.2
CWLP
cell wall-plasma membrane linker protein
Chr3_-_8085669 2.93 AT3G22840.1
ELIP1
Chlorophyll A-B binding family protein
Chr1_+_5946448 2.91 AT1G17360.1
AT1G17360
LOW protein: protein phosphatase 1 regulatory subunit-like protein
Chr2_-_9056481 2.88 AT2G21130.1
AT2G21130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Chr3_+_18262290 2.87 AT3G49260.1
AT3G49260.3
AT3G49260.2
AT3G49260.4
iqd21
IQ-domain 21
Chr3_-_20813046 2.85 AT3G56080.2
AT3G56080.1
AT3G56080
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_9560078 2.85 AT4G16990.16
AT4G16990.17
AT4G16990.1
AT4G16990.3
AT4G16990.4
RLM3
disease resistance protein (TIR-NBS class)
Chr1_-_156011 2.84 AT1G01420.1
UGT72B3
UDP-glucosyl transferase 72B3
Chr2_+_17507343 2.84 AT2G41940.1
ZFP8
zinc finger protein 8
Chr4_-_13958107 2.84 AT4G28080.1
AT4G28080
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_27257081 2.83 AT1G72410.2
AT1G72410.1
AT1G72410
COP1-interacting protein-like protein
Chr2_+_19065536 2.81 AT2G46450.1
AT2G46450.3
AT2G46450.4
AT2G46450.2
CNGC12
cyclic nucleotide-gated channel 12
Chr5_-_18518909 2.80 AT5G45650.2
AT5G45650.1
AT5G45650
subtilase family protein
Chr3_-_16598727 2.80 AT3G45260.2
AT3G45260.1
AT3G45260
C2H2-like zinc finger protein
Chr5_+_579744 2.79 AT5G02580.1
AT5G02580.3
AT5G02580.2
AT5G02580
argininosuccinate lyase
Chr1_-_1940463 2.78 AT1G06360.1
AT1G06360.2
AT1G06360
Fatty acid desaturase family protein
Chr5_-_25343369 2.77 AT5G63180.1
AT5G63180
Pectin lyase-like superfamily protein
Chr1_-_6860376 2.76 AT1G19835.1
AT1G19835.4
AT1G19835.6
AT1G19835.3
AT1G19835
filament-like protein (DUF869)
Chr1_-_156178 2.75 AT1G01420.2
UGT72B3
UDP-glucosyl transferase 72B3
Chr1_+_4467094 2.73 AT1G13110.1
CYP71B7
cytochrome P450, family 71 subfamily B, polypeptide 7
Chr2_+_18108289 2.72 AT2G43680.4
AT2G43680.2
AT2G43680.5
AT2G43680.3
IQD14
IQ-domain 14
Chr4_+_9558571 2.72 AT4G16990.5
AT4G16990.8
AT4G16990.7
AT4G16990.6
AT4G16990.2
AT4G16990.9
RLM3
disease resistance protein (TIR-NBS class)
Chr4_+_16543154 2.72 AT4G34650.2
SQS2
squalene synthase 2
Chr4_-_18190556 2.71 AT4G39040.2
AT4G39040.1
AT4G39040
RNA-binding CRS1 / YhbY (CRM) domain protein
Chr3_+_7946408 2.70 AT3G22420.4
AT3G22420.3
AT3G22420.5
AT3G22420.1
AT3G22420.2
AT3G22420.6
WNK2
with no lysine (K) kinase 2
Chr4_+_16542242 2.70 AT4G34650.1
SQS2
squalene synthase 2
Chr3_+_4544364 2.69 AT3G13810.5
AT3G13810.3
AT3G13810.4
AT3G13810.6
AT3G13810.2
AT3G13810.1
IDD11
indeterminate(ID)-domain 11
Chr5_+_23524130 2.69 AT5G58140.7
AT5G58140.6
AT5G58140.1
PHOT2
phototropin 2
Chr5_-_25898171 2.69 AT5G64770.1
RGF9
root meristem growth factor
Chr1_+_29354944 2.69 AT1G78070.1
AT1G78070
Transducin/WD40 repeat-like superfamily protein
Chr4_-_16799553 2.69 AT4G35300.11
AT4G35300.1
AT4G35300.2
AT4G35300.9
AT4G35300.3
AT4G35300.8
AT4G35300.6
AT4G35300.5
AT4G35300.4
AT4G35300.7
AT4G35300.10
TMT2
tonoplast monosaccharide transporter2
Chr5_-_25071111 2.68 AT5G62430.1
CDF1
cycling DOF factor 1
Chr1_+_136090 2.68 AT1G01350.1
AT1G01350
Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Chr5_+_5237970 2.67 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr4_+_18130237 2.67 AT4G38860.1
AT4G38860
SAUR-like auxin-responsive protein family
Chr4_+_2289902 2.66 AT4G04570.2
AT4G04570.1
CRK40
cysteine-rich RLK (RECEPTOR-like protein kinase) 40
Chr1_-_20563269 2.64 AT1G55110.2
AT1G55110.1
AT1G55110.3
IDD7
indeterminate(ID)-domain 7
Chr3_-_19353596 2.64 AT3G52180.3
AT3G52180.2
AT3G52180.1
SEX4
dual specificity protein phosphatase (DsPTP1) family protein
Chr4_-_900361 2.63 AT4G02050.2
STP7
sugar transporter protein 7
Chr4_-_13864327 2.62 AT4G27830.2
BGLU10
beta glucosidase 10
Chr1_-_130570 2.61 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_+_8941066 2.61 AT3G24520.1
HSFC1
heat shock transcription factor C1
Chr2_+_505375 2.61 AT2G02070.1
AT2G02070.2
IDD5
indeterminate(ID)-domain 5
Chr5_-_23501416 2.60 AT5G58070.1
TIL
temperature-induced lipocalin
Chr3_+_7789901 2.59 AT3G22104.2
AT3G22104.3
AT3G22104
Phototropic-responsive NPH3 family protein
Chr2_-_10113005 2.58 AT2G23760.3
AT2G23760.4
AT2G23760.1
BLH4
BEL1-like homeodomain 4
Chr5_-_10295283 2.58 AT5G28300.1
AT5G28300
Duplicated homeodomain-like superfamily protein
Chr3_-_2175686 2.58 AT3G06880.1
AT3G06880.5
AT3G06880.4
AT3G06880.3
AT3G06880.2
AT3G06880
Transducin/WD40 repeat-like superfamily protein
Chr3_-_6019666 2.57 AT3G17590.2
AT3G17590.1
AT3G17590.3
BSH
transcription regulatory protein SNF5, putative (BSH)
Chr5_-_24691095 2.56 AT5G61420.1
AT5G61420.2
MYB28
myb domain protein 28
Chr3_-_9634470 2.55 AT3G26290.1
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr3_-_21103719 2.55 AT3G57030.1
AT3G57030
Calcium-dependent phosphotriesterase superfamily protein
Chr3_-_5433851 2.54 AT3G16000.1
MFP1
MAR binding filament-like protein 1
Chr1_+_25319804 2.54 AT1G67560.1
LOX6
PLAT/LH2 domain-containing lipoxygenase family protein
Chr4_-_13864659 2.53 AT4G27830.1
BGLU10
beta glucosidase 10
Chr3_-_6771169 2.53 AT3G19515.2
AT3G19515
apoptosis inhibitor
Chr5_+_3157694 2.52 AT5G10100.1
AT5G10100.3
AT5G10100.4
TPPI
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_-_18428412 2.51 AT4G39710.2
AT4G39710.3
AT4G39710.1
PnsL4
FK506-binding protein 16-2
Chr1_-_8935544 2.51 AT1G25440.1
BBX15
B-box type zinc finger protein with CCT domain-containing protein
Chr1_+_23515680 2.51 AT1G63420.1
AT1G63420.2
AT1G63420
O-glucosyltransferase-like protein (DUF821)
Chr1_-_1704838 2.51 AT1G05680.1
UGT74E2
Uridine diphosphate glycosyltransferase 74E2
Chr4_+_18160903 2.51 AT4G38960.2
AT4G38960.6
AT4G38960.5
AT4G38960.1
AT4G38960.4
BBX19
B-box type zinc finger family protein
Chr3_-_22907958 2.50 AT3G61880.1
AT3G61880.2
CYP78A9
cytochrome p450 78a9
Chr4_-_11648644 2.50 AT4G21960.1
PRXR1
Peroxidase superfamily protein
Chr5_+_23524487 2.50 AT5G58140.4
AT5G58140.3
PHOT2
phototropin 2
Chr2_+_19104632 2.50 AT2G46530.1
AT2G46530.2
ARF11
auxin response factor 11
Chr2_-_17337269 2.49 AT2G41560.2
AT2G41560.3
ACA4
autoinhibited Ca(2+)-ATPase, isoform 4
Chr5_+_3261149 2.49 AT5G10370.1
AT5G10370
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
Chr5_-_25976356 2.49 AT5G65030.1
AT5G65030
nitric oxide synthase-interacting protein
Chr2_+_9579842 2.49 AT2G22540.3
AT2G22540.2
SVP
K-box region and MADS-box transcription factor family protein
Chr3_-_3025945 2.48 AT3G09850.1
AT3G09850
D111/G-patch domain-containing protein
Chr4_-_15614544 2.48 AT4G32340.1
AT4G32340
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_28466971 2.48 AT1G75820.1
CLV1
Leucine-rich receptor-like protein kinase family protein
Chr2_+_10244745 2.48 AT2G24100.1
ASG1
ATP-dependent DNA helicase
Chr4_-_901072 2.46 AT4G02050.1
STP7
sugar transporter protein 7
Chr1_+_29300971 2.46 AT1G77930.3
AT1G77930.1
AT1G77930.2
AT1G77930
Chaperone DnaJ-domain superfamily protein
Chr3_-_1305879 2.46 AT3G04760.2
AT3G04760.1
AT3G04760
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr1_-_25738134 2.45 AT1G68560.1
XYL1
alpha-xylosidase 1
Chr3_-_22169984 2.45 AT3G60030.1
SPL12
squamosa promoter-binding protein-like 12
Chr2_-_8206478 2.44 AT2G18940.1
AT2G18940
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_17550179 2.44 AT5G43700.1
ATAUX2-11
AUX/IAA transcriptional regulator family protein
Chr5_+_20764096 2.43 AT5G51070.1
ERD1
Clp ATPase
Chr1_-_26540818 2.43 AT1G70420.1
AT1G70420
DNA ligase-like protein, putative (DUF1645)
Chr3_+_17549111 2.43 AT3G47610.1
AT3G47610
transcription regulator/ zinc ion binding protein
Chr5_+_23523825 2.42 AT5G58140.2
AT5G58140.5
PHOT2
phototropin 2
Chr1_-_9879433 2.42 AT1G28260.2
AT1G28260.1
AT1G28260
Telomerase activating protein Est1
Chr1_+_29526861 2.42 AT1G78490.2
AT1G78490.1
CYP708A3
cytochrome P450, family 708, subfamily A, polypeptide 3
Chr2_-_856725 2.42 AT2G02950.1
PKS1
phytochrome kinase substrate 1
Chr4_-_17216530 2.41 AT4G36470.1
AT4G36470
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_26416126 2.41 AT5G66052.1
AT5G66052
transmembrane protein
Chr1_+_3157501 2.40 AT1G09750.1
AT1G09750
Eukaryotic aspartyl protease family protein
Chr4_+_6314755 2.40 AT4G10120.4
AT4G10120.2
ATSPS4F
Sucrose-phosphate synthase family protein
Chr5_+_18015522 2.40 AT5G44660.1
AT5G44660
hypothetical protein
Chr1_+_4877506 2.40 AT1G14280.1
PKS2
phytochrome kinase substrate 2
Chr4_+_6218319 2.40 AT4G09890.1
AT4G09890
mediator of RNA polymerase II transcription subunit, putative (DUF3511)
Chr3_-_9634822 2.39 AT3G26290.2
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr3_-_8639580 2.39 AT3G23910.1
AT3G23910
reverse transcriptase-like protein
Chr4_-_15730433 2.39 AT4G32610.1
AT4G32610
copper ion binding protein
Chr1_+_3530353 2.38 AT1G10657.4
AT1G10657.2
AT1G10657.3
AT1G10657.1
AT1G10657
transmembrane protein
Chr2_+_15501726 2.38 AT2G36910.1
ABCB1
ATP binding cassette subfamily B1
Chr5_-_23466534 2.38 AT5G57960.2
AT5G57960.1
AT5G57960
GTP-binding protein, HflX
Chr5_-_21873454 2.38 AT5G53880.1
AT5G53880
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G24260

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
3.1 15.4 GO:0032413 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
1.9 1.9 GO:0006884 cell volume homeostasis(GO:0006884)
1.9 9.5 GO:0072708 response to sorbitol(GO:0072708)
1.8 7.2 GO:0000023 maltose metabolic process(GO:0000023)
1.7 11.9 GO:0010438 cellular response to sulfur starvation(GO:0010438)
1.6 9.8 GO:0055129 L-proline biosynthetic process(GO:0055129)
1.5 3.1 GO:0035865 cellular response to potassium ion(GO:0035865)
1.5 4.6 GO:0035606 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
1.5 11.7 GO:0009819 drought recovery(GO:0009819)
1.4 4.3 GO:1902347 response to strigolactone(GO:1902347)
1.2 11.2 GO:0010188 response to microbial phytotoxin(GO:0010188)
1.2 6.0 GO:0005980 glycogen catabolic process(GO:0005980)
1.2 3.5 GO:0090392 sepal giant cell differentiation(GO:0090392)
1.2 3.5 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
1.1 4.6 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
1.1 3.4 GO:0035017 cuticle pattern formation(GO:0035017)
1.1 4.4 GO:0071836 nectar secretion(GO:0071836)
1.1 3.2 GO:0071485 cellular response to absence of light(GO:0071485)
1.0 6.2 GO:1902884 positive regulation of response to oxidative stress(GO:1902884)
1.0 13.2 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.9 8.5 GO:0051513 regulation of monopolar cell growth(GO:0051513)
0.9 2.8 GO:0042353 fucose biosynthetic process(GO:0042353)
0.9 3.7 GO:0050891 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.9 2.7 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.9 2.7 GO:0034247 snoRNA splicing(GO:0034247)
0.9 0.9 GO:0006498 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377)
0.8 3.4 GO:0010618 aerenchyma formation(GO:0010618)
0.8 8.2 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.8 4.1 GO:0090342 regulation of cell aging(GO:0090342)
0.8 3.3 GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0010322)
0.8 2.4 GO:0035019 somatic stem cell population maintenance(GO:0035019)
0.8 3.1 GO:0042814 monopolar cell growth(GO:0042814)
0.8 2.4 GO:0071493 cellular response to UV-B(GO:0071493)
0.8 3.9 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.8 2.3 GO:0072387 FAD biosynthetic process(GO:0006747) FAD metabolic process(GO:0046443) flavin adenine dinucleotide metabolic process(GO:0072387) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.8 6.9 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.8 6.1 GO:0044375 regulation of peroxisome size(GO:0044375)
0.8 3.0 GO:0033306 phytol metabolic process(GO:0033306)
0.7 3.6 GO:0060919 auxin influx(GO:0060919)
0.7 2.2 GO:0042908 xenobiotic transport(GO:0042908)
0.7 1.4 GO:1903725 regulation of phospholipid biosynthetic process(GO:0071071) regulation of phospholipid metabolic process(GO:1903725)
0.7 2.9 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.7 2.1 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
0.7 11.2 GO:0010039 response to iron ion(GO:0010039)
0.7 9.1 GO:0009608 response to symbiont(GO:0009608)
0.6 1.3 GO:0090227 regulation of red or far-red light signaling pathway(GO:0090227)
0.6 6.3 GO:0010031 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.6 1.9 GO:1900111 positive regulation of histone H3-K9 dimethylation(GO:1900111)
0.6 10.0 GO:0006538 glutamate catabolic process(GO:0006538)
0.6 1.9 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.6 1.8 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.6 3.0 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.6 1.8 GO:0031054 pre-miRNA processing(GO:0031054)
0.6 3.6 GO:0010148 transpiration(GO:0010148)
0.6 1.8 GO:0010792 DNA double-strand break processing involved in repair via single-strand annealing(GO:0010792) double-strand break repair via single-strand annealing(GO:0045002)
0.6 1.2 GO:1902066 regulation of cell wall pectin metabolic process(GO:1902066)
0.6 5.7 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.6 1.7 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.6 5.6 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.6 3.9 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.6 3.3 GO:0048439 flower morphogenesis(GO:0048439)
0.5 1.6 GO:0051639 actin filament network formation(GO:0051639)
0.5 3.8 GO:2000037 regulation of stomatal complex patterning(GO:2000037)
0.5 1.6 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.5 2.0 GO:0051938 L-amino acid import(GO:0043092) L-glutamate import(GO:0051938) L-alpha-amino acid transmembrane transport(GO:1902475)
0.5 2.5 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.5 2.0 GO:0015700 arsenite transport(GO:0015700)
0.5 1.5 GO:0002100 tRNA wobble adenosine to inosine editing(GO:0002100)
0.5 5.9 GO:0031053 primary miRNA processing(GO:0031053)
0.5 2.9 GO:0043479 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.5 1.5 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.5 2.9 GO:0010338 leaf formation(GO:0010338)
0.5 1.4 GO:0042407 cristae formation(GO:0042407)
0.5 2.8 GO:0043100 pyrimidine nucleobase salvage(GO:0043100)
0.5 2.8 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.5 1.4 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.5 4.6 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.5 1.4 GO:2001293 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA metabolic process(GO:2001293) malonyl-CoA catabolic process(GO:2001294)
0.4 6.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.4 1.8 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.4 1.7 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.4 1.3 GO:0018065 protein-cofactor linkage(GO:0018065)
0.4 2.2 GO:0010155 regulation of proton transport(GO:0010155)
0.4 1.3 GO:0001736 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.4 1.3 GO:0071266 L-methionine biosynthetic process from L-homoserine via cystathionine(GO:0019279) 'de novo' L-methionine biosynthetic process(GO:0071266)
0.4 1.7 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.4 3.3 GO:0010117 photoprotection(GO:0010117)
0.4 1.6 GO:0045038 protein import into chloroplast thylakoid membrane(GO:0045038)
0.4 2.0 GO:0010359 regulation of anion channel activity(GO:0010359)
0.4 2.0 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.4 0.8 GO:0034764 positive regulation of transmembrane transport(GO:0034764)
0.4 2.3 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.4 2.7 GO:0009643 photosynthetic acclimation(GO:0009643)
0.4 3.5 GO:0009942 longitudinal axis specification(GO:0009942)
0.4 2.7 GO:0006821 chloride transport(GO:0006821)
0.4 1.2 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.4 4.6 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.4 1.1 GO:0006808 regulation of nitrogen utilization(GO:0006808)
0.4 1.1 GO:0090549 response to carbon starvation(GO:0090549)
0.4 3.8 GO:0080183 response to photooxidative stress(GO:0080183)
0.4 1.1 GO:0046521 sphingoid catabolic process(GO:0046521)
0.4 1.9 GO:0019323 pentose catabolic process(GO:0019323)
0.4 1.8 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.4 1.4 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.4 8.6 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.4 1.1 GO:0000050 urea cycle(GO:0000050)
0.4 1.1 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.4 1.8 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.3 2.4 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231) flavin-containing compound biosynthetic process(GO:0042727)
0.3 3.1 GO:0030026 cellular manganese ion homeostasis(GO:0030026)
0.3 1.7 GO:0006775 fat-soluble vitamin metabolic process(GO:0006775) vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360) fat-soluble vitamin biosynthetic process(GO:0042362)
0.3 1.4 GO:0042450 arginine biosynthetic process via ornithine(GO:0042450)
0.3 3.1 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.3 12.9 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.3 6.4 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.3 2.3 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.3 1.7 GO:0051325 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.3 2.3 GO:0051127 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.3 2.3 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.3 1.6 GO:0080151 positive regulation of salicylic acid mediated signaling pathway(GO:0080151)
0.3 1.3 GO:0008614 pyridoxine metabolic process(GO:0008614)
0.3 6.0 GO:0009638 phototropism(GO:0009638)
0.3 1.6 GO:0006968 cellular defense response(GO:0006968)
0.3 1.9 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.3 1.9 GO:0010508 positive regulation of autophagy(GO:0010508)
0.3 3.2 GO:0010540 basipetal auxin transport(GO:0010540)
0.3 0.3 GO:0032351 negative regulation of hormone metabolic process(GO:0032351)
0.3 3.7 GO:0010380 regulation of chlorophyll biosynthetic process(GO:0010380)
0.3 2.1 GO:0046900 tetrahydrofolylpolyglutamate metabolic process(GO:0046900)
0.3 1.5 GO:0010271 regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404)
0.3 0.9 GO:0009584 detection of visible light(GO:0009584)
0.3 7.5 GO:0016109 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.3 0.9 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.3 13.0 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.3 0.9 GO:0033499 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.3 1.5 GO:2000580 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.3 3.5 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.3 1.1 GO:0048480 stigma development(GO:0048480)
0.3 1.4 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.3 1.7 GO:0016444 somatic cell DNA recombination(GO:0016444)
0.3 8.4 GO:0042631 cellular response to water deprivation(GO:0042631)
0.3 1.1 GO:0015669 gas transport(GO:0015669)
0.3 0.8 GO:0046459 short-chain fatty acid metabolic process(GO:0046459)
0.3 0.8 GO:0055047 generative cell mitosis(GO:0055047)
0.3 1.9 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.3 5.0 GO:2000377 regulation of reactive oxygen species metabolic process(GO:2000377)
0.3 0.8 GO:0080051 cutin transport(GO:0080051)
0.3 1.3 GO:0048871 multicellular organismal homeostasis(GO:0048871)
0.3 1.0 GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.3 5.3 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.3 2.8 GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043162)
0.2 1.2 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.2 0.5 GO:0002215 defense response to nematode(GO:0002215)
0.2 2.4 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.2 1.0 GO:0006741 NADP biosynthetic process(GO:0006741)
0.2 1.4 GO:0042391 regulation of membrane potential(GO:0042391)
0.2 2.9 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.2 0.7 GO:1900386 positive regulation of flavonol biosynthetic process(GO:1900386)
0.2 2.8 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.2 1.1 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.2 2.3 GO:0043171 peptide catabolic process(GO:0043171)
0.2 5.0 GO:0046838 phosphorylated carbohydrate dephosphorylation(GO:0046838)
0.2 0.7 GO:0090547 response to humidity(GO:0009270) response to low humidity(GO:0090547)
0.2 2.9 GO:0010076 maintenance of floral meristem identity(GO:0010076)
0.2 0.9 GO:0032324 Mo-molybdopterin cofactor biosynthetic process(GO:0006777) Mo-molybdopterin cofactor metabolic process(GO:0019720) molybdopterin cofactor biosynthetic process(GO:0032324) molybdopterin cofactor metabolic process(GO:0043545) prosthetic group metabolic process(GO:0051189)
0.2 0.9 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.2 1.3 GO:0006624 vacuolar protein processing(GO:0006624)
0.2 1.1 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.2 3.6 GO:0006074 (1->3)-beta-D-glucan metabolic process(GO:0006074) (1->3)-beta-D-glucan biosynthetic process(GO:0006075)
0.2 1.7 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.2 2.7 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.2 2.9 GO:0019747 regulation of isoprenoid metabolic process(GO:0019747)
0.2 1.3 GO:0015846 polyamine transport(GO:0015846)
0.2 1.7 GO:0016584 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.2 2.5 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.2 3.3 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.2 1.0 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.2 8.4 GO:0010286 heat acclimation(GO:0010286)
0.2 8.9 GO:0009637 response to blue light(GO:0009637)
0.2 2.0 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.2 1.2 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.2 1.8 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.2 1.6 GO:0051596 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.2 1.0 GO:0010161 red light signaling pathway(GO:0010161)
0.2 3.9 GO:0010207 photosystem II assembly(GO:0010207)
0.2 6.0 GO:0009958 positive gravitropism(GO:0009958)
0.2 0.9 GO:0009649 entrainment of circadian clock(GO:0009649)
0.2 2.6 GO:0009641 shade avoidance(GO:0009641)
0.2 5.8 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.2 3.2 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.2 2.9 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.2 0.5 GO:0051098 regulation of binding(GO:0051098)
0.2 0.4 GO:1902458 positive regulation of stomatal opening(GO:1902458)
0.2 1.9 GO:0050898 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.2 0.3 GO:0006527 arginine catabolic process(GO:0006527)
0.2 0.5 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.2 0.5 GO:0090435 protein localization to nuclear envelope(GO:0090435)
0.2 0.8 GO:0010050 vegetative phase change(GO:0010050)
0.2 0.5 GO:1990258 box C/D snoRNA 3'-end processing(GO:0000494) peptidyl-glutamine methylation(GO:0018364) box C/D snoRNA metabolic process(GO:0033967) box C/D snoRNA processing(GO:0034963) histone glutamine methylation(GO:1990258)
0.2 0.2 GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618)
0.2 6.8 GO:0046283 anthocyanin-containing compound metabolic process(GO:0046283)
0.2 0.9 GO:0010375 stomatal complex patterning(GO:0010375)
0.2 0.6 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.2 1.9 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.2 5.3 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.2 2.3 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.2 2.9 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.2 0.3 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 1.5 GO:0033619 membrane protein proteolysis(GO:0033619)
0.1 1.2 GO:0043486 histone exchange(GO:0043486)
0.1 1.6 GO:0042126 nitrate metabolic process(GO:0042126) nitrate assimilation(GO:0042128)
0.1 0.6 GO:0055088 lipid homeostasis(GO:0055088)
0.1 1.0 GO:0006526 arginine biosynthetic process(GO:0006526)
0.1 1.3 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.1 0.6 GO:0080093 regulation of photorespiration(GO:0080093)
0.1 1.1 GO:0043489 RNA stabilization(GO:0043489)
0.1 0.8 GO:0006112 glycogen metabolic process(GO:0005977) energy reserve metabolic process(GO:0006112)
0.1 1.7 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.1 0.8 GO:0051014 actin filament severing(GO:0051014)
0.1 0.3 GO:0006021 inositol biosynthetic process(GO:0006021)
0.1 2.9 GO:0046834 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.1 0.8 GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway(GO:0019288)
0.1 2.4 GO:0007052 mitotic spindle organization(GO:0007052)
0.1 0.4 GO:0097438 release of seed from dormancy(GO:0048838) exit from dormancy(GO:0097438)
0.1 2.1 GO:0051346 negative regulation of hydrolase activity(GO:0051346)
0.1 0.4 GO:0048863 stem cell differentiation(GO:0048863)
0.1 0.8 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.1 1.3 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 0.6 GO:0019401 alditol biosynthetic process(GO:0019401)
0.1 1.7 GO:0046352 disaccharide catabolic process(GO:0046352)
0.1 2.3 GO:0009269 response to desiccation(GO:0009269)
0.1 0.5 GO:0046475 cellular phosphate ion homeostasis(GO:0030643) glycerophospholipid catabolic process(GO:0046475) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.1 3.3 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.1 7.0 GO:0006972 hyperosmotic response(GO:0006972)
0.1 1.1 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1 3.2 GO:0080092 regulation of pollen tube growth(GO:0080092)
0.1 0.6 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.1 4.6 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.1 5.1 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.1 2.3 GO:0030042 actin filament depolymerization(GO:0030042)
0.1 0.8 GO:0009720 detection of hormone stimulus(GO:0009720) detection of endogenous stimulus(GO:0009726)
0.1 1.2 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.1 0.6 GO:0006013 mannose metabolic process(GO:0006013)
0.1 0.8 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655) phosphatidylglycerol metabolic process(GO:0046471)
0.1 1.8 GO:0043144 snoRNA processing(GO:0043144)
0.1 0.5 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.1 0.8 GO:0032204 regulation of telomere maintenance(GO:0032204)
0.1 1.4 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.1 1.0 GO:0046294 formaldehyde metabolic process(GO:0046292) formaldehyde catabolic process(GO:0046294)
0.1 1.0 GO:0055062 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 2.1 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.1 0.4 GO:0034389 lipid particle organization(GO:0034389)
0.1 1.4 GO:0050821 protein stabilization(GO:0050821)
0.1 2.0 GO:0051260 protein homooligomerization(GO:0051260)
0.1 0.2 GO:0010444 guard mother cell cytokinesis(GO:0010235) guard mother cell differentiation(GO:0010444)
0.1 1.3 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.1 0.9 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.1 1.5 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.1 1.6 GO:0010229 inflorescence development(GO:0010229)
0.1 0.4 GO:0030259 lipid glycosylation(GO:0030259)
0.1 0.2 GO:0010942 positive regulation of cell death(GO:0010942)
0.1 0.6 GO:0034035 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.1 4.4 GO:0034605 cellular response to heat(GO:0034605)
0.1 4.5 GO:0009749 response to glucose(GO:0009749)
0.1 0.7 GO:0033617 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.1 1.0 GO:0010030 positive regulation of seed germination(GO:0010030)
0.1 1.7 GO:1900865 chloroplast RNA modification(GO:1900865)
0.1 0.3 GO:1904667 negative regulation of protein ubiquitination(GO:0031397) negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667)
0.1 7.9 GO:0007623 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.1 1.2 GO:0031425 chloroplast RNA processing(GO:0031425)
0.1 2.5 GO:0006874 cellular calcium ion homeostasis(GO:0006874)
0.1 2.7 GO:0009631 cold acclimation(GO:0009631)
0.1 0.9 GO:0015996 chlorophyll catabolic process(GO:0015996) pigment catabolic process(GO:0046149)
0.1 0.7 GO:1990641 response to iron ion starvation(GO:1990641)
0.1 2.6 GO:0006338 chromatin remodeling(GO:0006338)
0.1 0.4 GO:0097502 mannosylation(GO:0097502)
0.1 1.3 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.1 1.1 GO:0008544 epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) epithelium development(GO:0060429)
0.1 0.9 GO:0052192 movement in host(GO:0044000) transport of virus in multicellular host(GO:0046739) movement in other organism involved in symbiotic interaction(GO:0051814) movement in host environment(GO:0052126) movement in environment of other organism involved in symbiotic interaction(GO:0052192)
0.1 0.9 GO:0051555 flavone metabolic process(GO:0051552) flavone biosynthetic process(GO:0051553) flavonol metabolic process(GO:0051554) flavonol biosynthetic process(GO:0051555)
0.1 3.2 GO:0006475 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.1 2.4 GO:0051225 spindle assembly(GO:0051225)
0.1 1.7 GO:0008356 asymmetric cell division(GO:0008356)
0.1 0.9 GO:0035510 DNA dealkylation(GO:0035510)
0.1 0.8 GO:0006265 DNA topological change(GO:0006265)
0.1 0.2 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.4 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.1 1.0 GO:0046033 AMP metabolic process(GO:0046033)
0.1 0.8 GO:0006353 DNA-templated transcription, termination(GO:0006353)
0.1 2.6 GO:0006813 potassium ion transport(GO:0006813)
0.1 0.4 GO:0046886 positive regulation of auxin biosynthetic process(GO:0010601) positive regulation of hormone biosynthetic process(GO:0046886)
0.1 2.2 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.1 1.7 GO:0016556 mRNA modification(GO:0016556)
0.1 0.6 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.1 1.0 GO:0009299 mRNA transcription(GO:0009299)
0.1 2.4 GO:0030641 regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453)
0.1 0.8 GO:0043647 inositol phosphate biosynthetic process(GO:0032958) inositol phosphate metabolic process(GO:0043647)
0.1 0.7 GO:1902408 preprophase band assembly(GO:0000913) cytokinesis, site selection(GO:0007105) mitotic cytokinesis, site selection(GO:1902408)
0.1 0.1 GO:0030837 negative regulation of actin filament polymerization(GO:0030837)
0.1 1.2 GO:0055070 copper ion homeostasis(GO:0055070)
0.1 0.3 GO:0080187 floral organ senescence(GO:0080187)
0.1 0.5 GO:0006376 mRNA splice site selection(GO:0006376)
0.1 1.2 GO:0000373 Group II intron splicing(GO:0000373)
0.1 1.4 GO:0030091 protein repair(GO:0030091)
0.1 3.5 GO:0016036 cellular response to phosphate starvation(GO:0016036)
0.1 7.5 GO:0009658 chloroplast organization(GO:0009658)
0.1 0.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.1 10.0 GO:0046777 protein autophosphorylation(GO:0046777)
0.1 1.4 GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter(GO:0032968)
0.1 0.6 GO:0010088 phloem development(GO:0010088)
0.1 0.5 GO:0032886 regulation of microtubule-based process(GO:0032886)
0.1 0.3 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 1.5 GO:0006506 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.1 0.8 GO:0046916 cellular transition metal ion homeostasis(GO:0046916)
0.1 0.2 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.1 0.6 GO:0001709 cell fate determination(GO:0001709)
0.1 0.9 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.1 1.3 GO:0009911 positive regulation of flower development(GO:0009911)
0.1 1.1 GO:0010074 maintenance of meristem identity(GO:0010074)
0.1 3.7 GO:0006352 DNA-templated transcription, initiation(GO:0006352)
0.1 0.2 GO:0080168 abscisic acid transport(GO:0080168)
0.1 2.4 GO:0010224 response to UV-B(GO:0010224)
0.1 2.4 GO:0006897 endocytosis(GO:0006897)
0.1 0.4 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.1 1.3 GO:0006284 base-excision repair(GO:0006284)
0.1 0.7 GO:0018401 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.2 GO:0007142 male meiosis II(GO:0007142)
0.0 2.3 GO:0006418 tRNA aminoacylation for protein translation(GO:0006418)
0.0 0.1 GO:0080113 regulation of seed growth(GO:0080113)
0.0 3.5 GO:0016579 protein deubiquitination(GO:0016579)
0.0 0.2 GO:0010065 primary meristem tissue development(GO:0010065) procambium histogenesis(GO:0010067)
0.0 1.2 GO:0006012 galactose metabolic process(GO:0006012)
0.0 1.2 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 0.3 GO:0007584 response to nutrient(GO:0007584)
0.0 0.3 GO:0016121 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.5 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.0 0.5 GO:0006465 signal peptide processing(GO:0006465)
0.0 2.4 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.3 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.2 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.1 GO:0030010 establishment of cell polarity(GO:0030010)
0.0 0.4 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 2.1 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 0.2 GO:0035627 ceramide transport(GO:0035627)
0.0 1.1 GO:0010043 response to zinc ion(GO:0010043)
0.0 0.3 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.0 0.3 GO:0042723 thiamine metabolic process(GO:0006772) thiamine-containing compound metabolic process(GO:0042723)
0.0 0.3 GO:0017183 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 1.4 GO:0072593 reactive oxygen species metabolic process(GO:0072593)
0.0 0.3 GO:1902074 response to salt(GO:1902074)
0.0 0.6 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.0 0.5 GO:0046470 phosphatidylcholine metabolic process(GO:0046470)
0.0 0.8 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.2 GO:0046173 polyol biosynthetic process(GO:0046173)
0.0 0.2 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.5 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.0 0.4 GO:0009612 response to mechanical stimulus(GO:0009612)
0.0 1.2 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.1 GO:0010044 response to aluminum ion(GO:0010044)
0.0 0.8 GO:0009853 photorespiration(GO:0009853)
0.0 0.6 GO:0009960 endosperm development(GO:0009960)
0.0 0.2 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.8 GO:0044744 protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744)
0.0 0.8 GO:0009690 cytokinin metabolic process(GO:0009690)
0.0 0.9 GO:0006400 tRNA modification(GO:0006400)
0.0 0.2 GO:0070475 rRNA base methylation(GO:0070475)
0.0 0.4 GO:0019852 L-ascorbic acid metabolic process(GO:0019852) L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.9 GO:0045732 positive regulation of protein catabolic process(GO:0045732)
0.0 0.8 GO:0044728 DNA methylation or demethylation(GO:0044728)
0.0 14.2 GO:0006468 protein phosphorylation(GO:0006468)
0.0 0.6 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.2 GO:0046337 phosphatidylethanolamine biosynthetic process(GO:0006646) phosphatidylethanolamine metabolic process(GO:0046337)
0.0 1.0 GO:0006887 exocytosis(GO:0006887)
0.0 0.3 GO:0042026 protein refolding(GO:0042026)
0.0 0.2 GO:0006743 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744)
0.0 0.2 GO:0080022 primary root development(GO:0080022)
0.0 0.7 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.0 0.4 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 0.9 GO:0045490 pectin catabolic process(GO:0045490)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.5 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
1.3 4.0 GO:0005775 vacuolar lumen(GO:0005775)
1.3 6.5 GO:0010007 magnesium chelatase complex(GO:0010007)
0.8 3.0 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.6 0.6 GO:0030863 cortical cytoskeleton(GO:0030863)
0.6 4.6 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.5 1.6 GO:0032432 actin filament bundle(GO:0032432)
0.5 10.8 GO:0009898 cytoplasmic side of plasma membrane(GO:0009898)
0.5 4.4 GO:0010445 nuclear dicing body(GO:0010445)
0.5 7.5 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.4 3.3 GO:0009538 photosystem I reaction center(GO:0009538)
0.4 6.1 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.4 1.5 GO:0009509 chromoplast(GO:0009509)
0.3 4.8 GO:0009547 plastid ribosome(GO:0009547)
0.3 1.0 GO:0016328 lateral plasma membrane(GO:0016328)
0.3 6.3 GO:0031354 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.3 2.8 GO:0000813 ESCRT I complex(GO:0000813)
0.3 4.3 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.3 2.4 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.3 0.9 GO:0005674 transcription factor TFIIF complex(GO:0005674)
0.3 1.5 GO:0030286 dynein complex(GO:0030286)
0.3 0.8 GO:0005694 chromosome(GO:0005694)
0.3 1.1 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.3 1.6 GO:0009360 DNA polymerase III complex(GO:0009360)
0.3 1.8 GO:0031977 thylakoid lumen(GO:0031977)
0.3 1.3 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.3 2.6 GO:0016514 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.2 5.9 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.2 4.4 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.2 2.3 GO:0031209 SCAR complex(GO:0031209)
0.2 3.3 GO:0030125 clathrin vesicle coat(GO:0030125)
0.2 1.1 GO:0035061 interchromatin granule(GO:0035061)
0.2 1.9 GO:0005677 chromatin silencing complex(GO:0005677)
0.2 4.2 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.2 0.8 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.2 1.8 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.2 1.2 GO:0000796 condensin complex(GO:0000796)
0.2 8.4 GO:0042646 plastid nucleoid(GO:0042646)
0.2 1.8 GO:0035861 site of double-strand break(GO:0035861)
0.2 1.8 GO:0010168 ER body(GO:0010168)
0.2 1.6 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.2 0.5 GO:0030981 cortical microtubule cytoskeleton(GO:0030981)
0.2 2.4 GO:0048500 signal recognition particle(GO:0048500)
0.2 3.2 GO:0031965 nuclear membrane(GO:0031965)
0.2 1.5 GO:0098553 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.2 0.5 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.2 3.1 GO:0031012 extracellular matrix(GO:0031012)
0.2 3.2 GO:0031903 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.1 0.9 GO:0070652 HAUS complex(GO:0070652)
0.1 2.9 GO:0070069 cytochrome complex(GO:0070069)
0.1 4.5 GO:0000123 histone acetyltransferase complex(GO:0000123)
0.1 0.9 GO:0030014 CCR4-NOT complex(GO:0030014)
0.1 0.8 GO:0017053 transcriptional repressor complex(GO:0017053)
0.1 10.2 GO:0016604 nuclear body(GO:0016604)
0.1 1.3 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 1.5 GO:0045298 tubulin complex(GO:0045298)
0.1 1.7 GO:0000786 nucleosome(GO:0000786)
0.1 15.6 GO:0000790 nuclear chromatin(GO:0000790)
0.1 0.9 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.1 1.9 GO:0009534 chloroplast thylakoid(GO:0009534) plastid thylakoid(GO:0031976)
0.1 1.5 GO:0005880 nuclear microtubule(GO:0005880)
0.1 0.2 GO:0017119 Golgi transport complex(GO:0017119)
0.1 2.9 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.1 0.4 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.1 0.2 GO:0044462 cell wall part(GO:0044426) external encapsulating structure part(GO:0044462)
0.1 11.7 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.1 0.7 GO:0000314 organellar small ribosomal subunit(GO:0000314)
0.1 5.1 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 0.4 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 3.0 GO:0010287 plastoglobule(GO:0010287)
0.1 1.1 GO:0009574 preprophase band(GO:0009574)
0.1 12.6 GO:0042651 photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651)
0.1 1.3 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.1 0.6 GO:0009522 photosystem I(GO:0009522)
0.1 23.6 GO:0005777 peroxisome(GO:0005777) microbody(GO:0042579)
0.1 18.7 GO:0009532 plastid stroma(GO:0009532)
0.1 1.7 GO:0016324 apical plasma membrane(GO:0016324)
0.1 3.1 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.1 0.5 GO:0005787 signal peptidase complex(GO:0005787)
0.1 16.2 GO:0005802 trans-Golgi network(GO:0005802)
0.1 1.1 GO:0009531 secondary cell wall(GO:0009531)
0.1 3.2 GO:0005684 U2-type spliceosomal complex(GO:0005684)
0.1 0.2 GO:0002178 palmitoyltransferase complex(GO:0002178) serine C-palmitoyltransferase complex(GO:0017059) endoplasmic reticulum palmitoyltransferase complex(GO:0031211)
0.1 0.3 GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) cytoplasmic side of endoplasmic reticulum membrane(GO:0098554)
0.1 0.7 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 0.9 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 3.1 GO:0090406 pollen tube(GO:0090406)
0.1 0.1 GO:0042709 succinate-CoA ligase complex(GO:0042709)
0.1 0.2 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.1 0.2 GO:0097361 CIA complex(GO:0097361)
0.0 0.3 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.0 4.8 GO:0031969 chloroplast membrane(GO:0031969)
0.0 9.0 GO:0005730 nucleolus(GO:0005730)
0.0 1.9 GO:0000793 condensed chromosome(GO:0000793)
0.0 4.3 GO:0044217 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 1.6 GO:0016592 mediator complex(GO:0016592)
0.0 0.4 GO:0030131 clathrin adaptor complex(GO:0030131)
0.0 2.7 GO:0005874 microtubule(GO:0005874)
0.0 133.5 GO:0005829 cytosol(GO:0005829)
0.0 1.2 GO:0010008 endosome membrane(GO:0010008)
0.0 1.2 GO:0005770 late endosome(GO:0005770)
0.0 8.3 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.3 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 170.6 GO:0005634 nucleus(GO:0005634)
0.0 0.6 GO:0005811 lipid particle(GO:0005811)
0.0 0.7 GO:0005840 ribosome(GO:0005840)
0.0 0.2 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.3 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.5 7.5 GO:0043425 bHLH transcription factor binding(GO:0043425)
2.5 9.8 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
2.2 19.8 GO:0009882 blue light photoreceptor activity(GO:0009882)
2.1 12.5 GO:0004121 cystathionine beta-lyase activity(GO:0004121)
1.7 6.7 GO:0015603 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
1.7 9.9 GO:0004310 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
1.6 6.2 GO:0050162 oxalate oxidase activity(GO:0050162)
1.5 4.6 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
1.5 4.4 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
1.3 3.8 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
1.2 3.7 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
1.2 6.0 GO:0008184 glycogen phosphorylase activity(GO:0008184)
1.1 6.9 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
1.1 4.6 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
1.1 4.4 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
1.1 6.5 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
1.0 10.0 GO:0004351 glutamate decarboxylase activity(GO:0004351)
1.0 3.0 GO:0015146 pentose transmembrane transporter activity(GO:0015146)
1.0 2.9 GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity(GO:0003848) dihydropteroate synthase activity(GO:0004156)
1.0 3.8 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.9 4.7 GO:0030371 translation repressor activity(GO:0030371)
0.9 3.6 GO:0019172 glyoxalase III activity(GO:0019172)
0.9 2.7 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.9 2.6 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.9 4.3 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.8 4.2 GO:0043225 arsenite secondary active transmembrane transporter activity(GO:0008490) arsenite-transmembrane transporting ATPase activity(GO:0015446) anion transmembrane-transporting ATPase activity(GO:0043225)
0.8 1.6 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.8 3.0 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.7 5.9 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.7 2.2 GO:0004134 4-alpha-glucanotransferase activity(GO:0004134)
0.7 2.1 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.7 2.0 GO:0022858 L-alanine transmembrane transporter activity(GO:0015180) alanine transmembrane transporter activity(GO:0022858)
0.7 2.7 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.7 20.7 GO:0048029 monosaccharide binding(GO:0048029)
0.6 0.6 GO:0080002 UDP-glucose:4-aminobenzoate acylglucosyltransferase activity(GO:0080002)
0.6 1.9 GO:0004750 ribulose-phosphate 3-epimerase activity(GO:0004750)
0.6 2.4 GO:0070034 telomerase RNA binding(GO:0070034)
0.6 3.0 GO:0046577 long-chain-alcohol oxidase activity(GO:0046577)
0.6 2.4 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.6 2.4 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.6 1.8 GO:0070336 Y-form DNA binding(GO:0000403) flap-structured DNA binding(GO:0070336)
0.6 4.1 GO:0032977 membrane insertase activity(GO:0032977)
0.6 3.5 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.6 2.3 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.6 1.7 GO:0019776 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.5 3.3 GO:0051723 protein methylesterase activity(GO:0051723)
0.5 3.6 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.5 1.9 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.5 2.3 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.5 1.4 GO:0016842 amidine-lyase activity(GO:0016842)
0.5 1.4 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.5 5.9 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.5 1.8 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.4 2.7 GO:0050017 L-3-cyanoalanine synthase activity(GO:0050017)
0.4 4.0 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.4 11.0 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.4 1.7 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.4 1.3 GO:0004359 glutaminase activity(GO:0004359)
0.4 2.6 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.4 1.7 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.4 3.2 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.4 2.0 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.4 3.5 GO:0008878 glucose-1-phosphate adenylyltransferase activity(GO:0008878)
0.4 14.6 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.4 3.1 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.4 3.0 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.4 4.4 GO:0070300 phosphatidic acid binding(GO:0070300)
0.4 1.5 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.4 3.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.4 1.4 GO:0004817 cysteine-tRNA ligase activity(GO:0004817)
0.3 2.4 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.3 1.0 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.3 3.7 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.3 1.4 GO:0047517 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.3 4.4 GO:2001070 starch binding(GO:2001070)
0.3 1.3 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.3 3.0 GO:0043495 protein anchor(GO:0043495)
0.3 1.0 GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity(GO:0004042)
0.3 2.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.3 1.7 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.3 2.3 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.3 4.6 GO:0019210 kinase inhibitor activity(GO:0019210)
0.3 1.3 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.3 3.8 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.3 5.3 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.3 0.9 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.3 5.6 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.3 2.2 GO:0001047 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.3 11.3 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.3 1.5 GO:0000048 peptidyltransferase activity(GO:0000048) glutathione hydrolase activity(GO:0036374)
0.3 1.5 GO:0008251 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.3 0.9 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.3 2.1 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.3 0.9 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.3 1.5 GO:0045505 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.3 0.9 GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity(GO:0000225)
0.3 4.5 GO:0035064 methylated histone binding(GO:0035064)
0.3 3.7 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.3 1.4 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.3 0.8 GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor(GO:0052592)
0.3 5.9 GO:0080032 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.3 0.8 GO:0000823 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326)
0.3 4.6 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.3 1.0 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.3 1.3 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.2 0.7 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.2 4.1 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.2 1.2 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.2 1.7 GO:0102360 flavonol 3-O-glucosyltransferase activity(GO:0047893) daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.2 3.5 GO:0016157 sucrose synthase activity(GO:0016157)
0.2 1.9 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.2 4.4 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.2 2.5 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.2 1.6 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.2 2.0 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.2 1.8 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.2 0.9 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.2 1.1 GO:0009678 hydrogen-translocating pyrophosphatase activity(GO:0009678)
0.2 1.9 GO:0004124 cysteine synthase activity(GO:0004124)
0.2 0.6 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.2 1.9 GO:0008083 growth factor activity(GO:0008083)
0.2 0.8 GO:0008301 DNA binding, bending(GO:0008301)
0.2 2.8 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.2 3.0 GO:0051879 Hsp90 protein binding(GO:0051879)
0.2 0.8 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.2 0.8 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.2 1.2 GO:0022835 ionotropic glutamate receptor activity(GO:0004970) extracellular ligand-gated ion channel activity(GO:0005230) transmitter-gated ion channel activity(GO:0022824) transmitter-gated channel activity(GO:0022835) neurotransmitter receptor activity(GO:0030594)
0.2 2.1 GO:0016161 beta-amylase activity(GO:0016161)
0.2 3.7 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.2 0.7 GO:0070401 NADP+ binding(GO:0070401)
0.2 1.8 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.2 1.8 GO:0035198 miRNA binding(GO:0035198)
0.2 1.1 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.2 1.1 GO:0005088 Ras guanyl-nucleotide exchange factor activity(GO:0005088)
0.2 1.6 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.2 2.6 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.2 1.8 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.2 1.0 GO:0097001 sphingolipid binding(GO:0046625) ceramide binding(GO:0097001)
0.2 1.2 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.2 1.4 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 1.5 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.2 1.9 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.2 1.5 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.2 1.7 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.2 5.4 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.2 1.8 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.2 3.7 GO:0008143 poly(A) binding(GO:0008143)
0.2 2.6 GO:0003725 double-stranded RNA binding(GO:0003725)
0.2 0.5 GO:0036009 protein-glutamine N-methyltransferase activity(GO:0036009) histone-glutamine methyltransferase activity(GO:1990259)
0.2 8.6 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.2 0.9 GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity(GO:0043878)
0.1 1.0 GO:0019903 protein phosphatase binding(GO:0019903)
0.1 1.2 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.4 GO:0015026 coreceptor activity(GO:0015026)
0.1 0.3 GO:0030332 cyclin binding(GO:0030332)
0.1 0.7 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.1 1.1 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.1 7.3 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 1.7 GO:0002020 protease binding(GO:0002020)
0.1 0.8 GO:0030527 structural constituent of chromatin(GO:0030527)
0.1 0.8 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.1 0.4 GO:0016906 sterol 3-beta-glucosyltransferase activity(GO:0016906)
0.1 1.2 GO:0016307 phosphatidylinositol phosphate kinase activity(GO:0016307)
0.1 16.4 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.1 1.3 GO:0009008 DNA-methyltransferase activity(GO:0009008)
0.1 0.5 GO:0016920 pyroglutamyl-peptidase activity(GO:0016920)
0.1 1.4 GO:0043566 structure-specific DNA binding(GO:0043566)
0.1 3.5 GO:0097602 cullin family protein binding(GO:0097602)
0.1 1.6 GO:0003689 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.1 1.5 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 1.3 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 0.6 GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794)
0.1 2.4 GO:0051087 chaperone binding(GO:0051087)
0.1 1.3 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.1 1.0 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.1 0.7 GO:0015505 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.1 0.3 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 1.8 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.1 0.6 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.9 GO:0051011 microtubule minus-end binding(GO:0051011)
0.1 0.4 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.1 4.5 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 0.4 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 1.4 GO:0051117 ATPase binding(GO:0051117)
0.1 0.6 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.1 0.7 GO:0004356 glutamate-ammonia ligase activity(GO:0004356)
0.1 0.3 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.1 0.8 GO:0080161 auxin transmembrane transporter activity(GO:0080161)
0.1 2.3 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.1 0.4 GO:0004831 tyrosine-tRNA ligase activity(GO:0004831)
0.1 0.3 GO:0004412 homoserine dehydrogenase activity(GO:0004412)
0.1 0.9 GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors(GO:0016730)
0.1 0.3 GO:0004788 thiamine diphosphokinase activity(GO:0004788) thiamine binding(GO:0030975)
0.1 4.6 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.1 1.4 GO:0050308 sugar-phosphatase activity(GO:0050308)
0.1 1.1 GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor(GO:0016641)
0.1 0.8 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.1 1.0 GO:0010385 double-stranded methylated DNA binding(GO:0010385)
0.1 0.7 GO:0008252 nucleotidase activity(GO:0008252)
0.1 0.2 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.1 3.4 GO:0051082 unfolded protein binding(GO:0051082)
0.1 0.5 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.1 1.8 GO:0030276 clathrin binding(GO:0030276)
0.1 2.2 GO:0016840 carbon-nitrogen lyase activity(GO:0016840)
0.1 0.9 GO:0030628 pre-mRNA 3'-splice site binding(GO:0030628)
0.1 3.4 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.1 1.0 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.1 0.2 GO:0003910 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.1 0.8 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.1 11.2 GO:0043492 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492)
0.1 1.1 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.1 1.3 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.1 7.9 GO:0003682 chromatin binding(GO:0003682)
0.1 1.2 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 2.9 GO:0043621 protein self-association(GO:0043621)
0.1 0.8 GO:0004017 adenylate kinase activity(GO:0004017)
0.1 3.1 GO:0005261 cation channel activity(GO:0005261)
0.1 0.4 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 0.4 GO:0017070 U6 snRNA binding(GO:0017070)
0.1 0.9 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.1 0.1 GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity(GO:0008835)
0.1 2.0 GO:0004812 aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876)
0.1 0.4 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.1 0.4 GO:0051139 calcium:proton antiporter activity(GO:0015369) metal ion:proton antiporter activity(GO:0051139)
0.1 0.3 GO:0004333 fumarate hydratase activity(GO:0004333)
0.1 0.1 GO:0004775 succinate-CoA ligase activity(GO:0004774) succinate-CoA ligase (ADP-forming) activity(GO:0004775) succinate-CoA ligase (GDP-forming) activity(GO:0004776)
0.1 0.6 GO:0070181 small ribosomal subunit rRNA binding(GO:0070181)
0.1 18.0 GO:0005506 iron ion binding(GO:0005506)
0.1 0.5 GO:0004526 ribonuclease P activity(GO:0004526)
0.1 86.7 GO:0001071 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.1 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 6.7 GO:0008017 microtubule binding(GO:0008017)
0.1 1.7 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.1 3.5 GO:0036459 thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459)
0.1 0.9 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.1 1.5 GO:0003713 transcription coactivator activity(GO:0003713)
0.1 0.9 GO:0008187 poly-pyrimidine tract binding(GO:0008187)
0.1 0.8 GO:0008094 DNA-dependent ATPase activity(GO:0008094)
0.0 1.5 GO:0016597 amino acid binding(GO:0016597)
0.0 1.2 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.9 GO:0000155 phosphorelay sensor kinase activity(GO:0000155)
0.0 33.0 GO:0005524 ATP binding(GO:0005524)
0.0 3.8 GO:0051015 actin filament binding(GO:0051015)
0.0 2.6 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.8 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 6.6 GO:0043531 ADP binding(GO:0043531)
0.0 2.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.6 GO:0070122 isopeptidase activity(GO:0070122)
0.0 5.1 GO:0017171 serine-type peptidase activity(GO:0008236) serine hydrolase activity(GO:0017171)
0.0 0.6 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 2.1 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 2.4 GO:0035251 UDP-glucosyltransferase activity(GO:0035251)
0.0 1.1 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.2 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.0 0.3 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.5 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.6 GO:0015079 potassium ion transmembrane transporter activity(GO:0015079)
0.0 0.1 GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.0 0.5 GO:0003951 NAD+ kinase activity(GO:0003951)
0.0 0.2 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.6 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.1 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.0 0.3 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.0 0.1 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.0 1.1 GO:0016887 ATPase activity(GO:0016887)
0.0 0.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.0 0.1 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.2 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.4 GO:0016168 chlorophyll binding(GO:0016168)
0.0 1.3 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.6 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 1.1 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 4.3 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 0.2 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.1 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.6 GO:0016782 transferase activity, transferring sulfur-containing groups(GO:0016782)
0.0 2.3 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.0 0.2 GO:0008649 rRNA methyltransferase activity(GO:0008649)
0.0 0.2 GO:0015248 sterol transporter activity(GO:0015248)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 4.3 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.7 2.6 PID LYMPH ANGIOGENESIS PATHWAY VEGFR3 signaling in lymphatic endothelium
0.6 1.7 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.5 2.7 PID VEGFR1 PATHWAY VEGFR1 specific signals
0.4 2.2 PID S1P META PATHWAY Sphingosine 1-phosphate (S1P) pathway
0.4 1.2 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes
0.4 1.2 PID A6B1 A6B4 INTEGRIN PATHWAY a6b1 and a6b4 Integrin signaling
0.3 1.5 PID AP1 PATHWAY AP-1 transcription factor network
0.2 0.7 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.2 0.2 PID KIT PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)
0.2 1.1 ST FAS SIGNALING PATHWAY Fas Signaling Pathway
0.1 0.6 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.1 0.7 PID ERBB1 DOWNSTREAM PATHWAY ErbB1 downstream signaling
0.0 0.1 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.1 PID E2F PATHWAY E2F transcription factor network
0.0 0.0 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
3.7 11.1 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
1.4 4.1 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
1.1 4.3 REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.7 2.6 REACTOME SIGNAL ATTENUATION Genes involved in Signal attenuation
0.6 1.8 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.6 1.2 REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK
0.5 1.5 REACTOME GLUTATHIONE CONJUGATION Genes involved in Glutathione conjugation
0.5 3.0 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.4 1.3 REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers
0.4 0.8 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.4 3.2 REACTOME PPARA ACTIVATES GENE EXPRESSION Genes involved in PPARA Activates Gene Expression
0.4 1.2 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.3 1.4 REACTOME L1CAM INTERACTIONS Genes involved in L1CAM interactions
0.3 1.3 REACTOME RECYCLING OF BILE ACIDS AND SALTS Genes involved in Recycling of bile acids and salts
0.2 0.7 REACTOME INWARDLY RECTIFYING K CHANNELS Genes involved in Inwardly rectifying K+ channels
0.2 5.8 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport
0.2 0.2 REACTOME SIGNALING BY SCF KIT Genes involved in Signaling by SCF-KIT
0.2 2.0 REACTOME METABOLISM OF CARBOHYDRATES Genes involved in Metabolism of carbohydrates
0.2 0.8 REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.1 0.4 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.1 1.3 REACTOME HIV LIFE CYCLE Genes involved in HIV Life Cycle
0.1 1.6 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.1 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.1 REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS Genes involved in Glycerophospholipid biosynthesis