Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT1G24260
Z-value: 5.04
Transcription factors associated with AT1G24260
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G24260
|
AT1G24260 | K-box region and MADS-box transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SEP3 | arTal_v1_Chr1_-_8596098_8596123 | -0.61 | 2.1e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 11.07 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 8.89 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 6.52 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 6.35 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr3_-_23334034_23334034 Show fit | 6.33 |
AT3G63160.1
|
outer envelope membrane protein |
|
| arTal_v1_Chr5_+_17987591_17987591 Show fit | 6.17 |
AT5G44590.2
AT5G44590.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr2_+_16079679_16079679 Show fit | 5.40 |
AT2G38390.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr2_-_16603059_16603061 Show fit | 5.33 |
AT2G39800.2
AT2G39800.4 AT2G39800.3 |
delta1-pyrroline-5-carboxylate synthase 1 |
|
| arTal_v1_Chr4_-_9607402_9607402 Show fit | 4.98 |
AT4G17090.1
|
chloroplast beta-amylase |
|
| arTal_v1_Chr5_-_20204595_20204595 Show fit | 4.98 |
AT5G49730.1
AT5G49730.2 |
ferric reduction oxidase 6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G24260
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.1 | 15.4 | GO:0032413 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.0 | 14.2 | GO:0006468 | protein phosphorylation(GO:0006468) |
| 1.0 | 13.2 | GO:2000071 | regulation of defense response by callose deposition(GO:2000071) |
| 0.3 | 13.0 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.3 | 12.9 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
| 1.7 | 11.9 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 1.5 | 11.7 | GO:0009819 | drought recovery(GO:0009819) |
| 1.2 | 11.2 | GO:0010188 | response to microbial phytotoxin(GO:0010188) |
| 0.7 | 11.2 | GO:0010039 | response to iron ion(GO:0010039) |
| 0.6 | 10.0 | GO:0006538 | glutamate catabolic process(GO:0006538) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 170.6 | GO:0005634 | nucleus(GO:0005634) |
| 0.0 | 133.5 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 23.6 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 18.7 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.1 | 16.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.1 | 15.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.1 | 12.6 | GO:0042651 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
| 0.1 | 11.7 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.5 | 10.8 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.1 | 10.2 | GO:0016604 | nuclear body(GO:0016604) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 86.7 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.0 | 33.0 | GO:0005524 | ATP binding(GO:0005524) |
| 0.7 | 20.7 | GO:0048029 | monosaccharide binding(GO:0048029) |
| 2.2 | 19.8 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.1 | 18.0 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.1 | 16.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.4 | 14.6 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 2.1 | 12.5 | GO:0004121 | cystathionine beta-lyase activity(GO:0004121) |
| 0.3 | 11.3 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
| 0.1 | 11.2 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 4.3 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.5 | 2.7 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.7 | 2.6 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.4 | 2.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.6 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.3 | 1.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.4 | 1.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.4 | 1.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.2 | 1.1 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.2 | 0.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.7 | 11.1 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 5.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.1 | 4.3 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 1.4 | 4.1 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.4 | 3.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.5 | 3.0 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.7 | 2.6 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
| 0.2 | 2.0 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.6 | 1.8 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 1.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |