GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT1G24250
|
AT1G24250 | Paired amphipathic helix (PAH2) superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT1G24250 | arTal_v1_Chr1_-_8589546_8589546 | -0.09 | 7.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.42 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.28 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
arTal_v1_Chr4_+_13128394_13128394 Show fit | 1.26 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
arTal_v1_Chr1_-_2747936_2747967 Show fit | 0.99 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
arTal_v1_Chr3_-_17008528_17008528 Show fit | 0.88 |
AT3G46280.1
|
kinase-like protein |
|
arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.86 |
AT3G21720.1
|
isocitrate lyase |
|
arTal_v1_Chr3_-_1758807_1758807 Show fit | 0.84 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
arTal_v1_Chr1_+_15081952_15081952 Show fit | 0.83 |
AT1G40104.1
|
hypothetical protein |
|
arTal_v1_Chr5_+_17760865_17760865 Show fit | 0.75 |
AT5G44130.1
|
FASCICLIN-like arabinogalactan protein 13 precursor |
|
arTal_v1_Chr3_-_8290164_8290164 Show fit | 0.73 |
AT3G23230.1
|
Integrase-type DNA-binding superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.8 | GO:0006567 | threonine catabolic process(GO:0006567) |
0.0 | 2.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.1 | 1.9 | GO:0042335 | cuticle development(GO:0042335) |
0.0 | 1.5 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.0 | 1.1 | GO:0008283 | cell proliferation(GO:0008283) |
0.2 | 1.0 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
0.2 | 0.9 | GO:0006097 | glyoxylate cycle(GO:0006097) |
0.1 | 0.9 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
0.0 | 0.9 | GO:0035265 | organ growth(GO:0035265) |
0.2 | 0.8 | GO:0080003 | thalianol metabolic process(GO:0080003) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.3 | 1.4 | GO:0035061 | interchromatin granule(GO:0035061) |
0.3 | 0.9 | GO:0009514 | glyoxysome(GO:0009514) |
0.0 | 0.9 | GO:0005811 | lipid particle(GO:0005811) |
0.1 | 0.7 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
0.0 | 0.7 | GO:0030173 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 0.5 | GO:0001401 | mitochondrial sorting and assembly machinery complex(GO:0001401) |
0.0 | 0.5 | GO:0010319 | stromule(GO:0010319) |
0.0 | 0.4 | GO:0000792 | heterochromatin(GO:0000792) |
0.0 | 0.4 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.8 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
0.0 | 1.5 | GO:0030599 | pectinesterase activity(GO:0030599) |
0.2 | 1.3 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
0.1 | 1.3 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.0 | 1.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.1 | 1.0 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
0.0 | 0.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
0.2 | 0.7 | GO:0009924 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
0.1 | 0.7 | GO:0010178 | IAA-amino acid conjugate hydrolase activity(GO:0010178) |
0.1 | 0.7 | GO:0035673 | oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.3 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
0.0 | 0.1 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |