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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G20980
Z-value: 1.25
Transcription factors associated with AT1G20980
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G20980
|
AT1G20980 | squamosa promoter binding protein-like 14 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL14 | arTal_v1_Chr1_+_7324471_7324471 | -0.40 | 1.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_538250_538250 Show fit | 1.54 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 1.30 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr5_-_816670_816670 Show fit | 1.29 |
AT5G03350.1
|
Legume lectin family protein |
|
| arTal_v1_Chr3_+_8918267_8918267 Show fit | 1.26 |
AT3G24500.1
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_+_29178705_29178705 Show fit | 1.06 |
AT1G77640.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr5_-_1994824_1994961 Show fit | 1.05 |
AT5G06530.2
AT5G06530.3 AT5G06530.4 AT5G06530.1 |
ABC-2 type transporter family protein |
|
| arTal_v1_Chr2_-_18811085_18811125 Show fit | 1.03 |
AT2G45660.2
AT2G45660.1 |
AGAMOUS-like 20 |
|
| arTal_v1_Chr1_+_27190036_27190036 Show fit | 1.00 |
AT1G72240.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_7496292_7496292 Show fit | 0.98 |
AT2G17230.1
|
EXORDIUM like 5 |
|
| arTal_v1_Chr5_+_733887_733887 Show fit | 0.98 |
AT5G03120.1
AT5G03120.2 |
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G20980
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.7 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) |
| 0.0 | 2.3 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.3 | 2.2 | GO:0061087 | positive regulation of histone H3-K27 methylation(GO:0061087) |
| 0.1 | 1.7 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
| 0.0 | 1.7 | GO:0009741 | response to brassinosteroid(GO:0009741) |
| 0.1 | 1.5 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.0 | 1.5 | GO:0007623 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.1 | 1.4 | GO:0010077 | maintenance of inflorescence meristem identity(GO:0010077) |
| 0.2 | 1.3 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.2 | 1.2 | GO:0046713 | borate transport(GO:0046713) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 1.5 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.4 | 1.2 | GO:0043667 | lateral plasma membrane(GO:0016328) pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 1.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 1.1 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.2 | 1.0 | GO:0044420 | extracellular matrix component(GO:0044420) pollen coat(GO:0070505) |
| 0.1 | 0.9 | GO:0010445 | nuclear dicing body(GO:0010445) |
| 0.0 | 0.9 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.0 | 0.7 | GO:0048500 | signal recognition particle(GO:0048500) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 3.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 2.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.0 | 2.9 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.3 | 2.1 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.1 | 2.0 | GO:0015385 | sodium:proton antiporter activity(GO:0015385) |
| 0.1 | 1.8 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 1.4 | GO:0015297 | antiporter activity(GO:0015297) |
| 0.3 | 1.3 | GO:0004473 | malate dehydrogenase (decarboxylating) (NADP+) activity(GO:0004473) |
| 0.1 | 1.3 | GO:0034595 | phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity(GO:0004439) phosphatidylinositol phosphate 5-phosphatase activity(GO:0034595) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.0 | 0.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.0 | 0.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.0 | 0.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.2 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.1 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |