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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT1G20910
Z-value: 1.41
Transcription factors associated with AT1G20910
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G20910
|
AT1G20910 | ARID/BRIGHT DNA-binding domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G20910 | arTal_v1_Chr1_-_7281236_7281236 | -0.48 | 8.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 2.61 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.20 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 2.11 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 2.08 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 2.00 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.99 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr3_-_3993886_3993886 Show fit | 1.71 |
AT3G12580.1
|
heat shock protein 70 |
|
| arTal_v1_Chr4_-_12333904_12333904 Show fit | 1.70 |
AT4G23670.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.70 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.68 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G20910
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 5.4 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 4.7 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 4.2 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.6 | 3.4 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.8 | 3.1 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.5 | 3.1 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.0 | 3.0 | GO:0032259 | methylation(GO:0032259) |
| 0.1 | 2.7 | GO:0031407 | oxylipin metabolic process(GO:0031407) |
| 0.2 | 2.6 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) |
| 0.1 | 2.3 | GO:0045292 | mRNA cis splicing, via spliceosome(GO:0045292) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.5 | 2.3 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 1.9 | GO:0010319 | stromule(GO:0010319) |
| 0.4 | 1.8 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.0 | 1.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 1.6 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 1.6 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.2 | 1.4 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
| 0.1 | 1.2 | GO:0009531 | secondary cell wall(GO:0009531) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.2 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 4.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 4.7 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 4.5 | GO:0020037 | heme binding(GO:0020037) |
| 0.4 | 4.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.5 | 3.6 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.2 | 3.1 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.4 | 2.9 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.0 | 2.5 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.3 | GO:0016759 | cellulose synthase activity(GO:0016759) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.7 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.2 | 0.6 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.2 | 0.5 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.6 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.5 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.5 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.2 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |